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26 Open 22 Closed
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Issues list

pyscenic_binarize_aucell - help section fix
#333 opened Oct 11, 2024 by anilthanki
@pcm32 @anilthanki
Decoupler pathway inference: consider gene symbol field in AnnData persist-seq Requests from Persist-Seq
#327 opened Jul 25, 2024 by pcm32
@anilthanki
Elbow Plot
#315 opened Mar 28, 2024 by mthang
1
ScPred - version inconsistency for feature selection
#302 opened Aug 23, 2023 by hexhowells
1
Garnett outdated libraries
#301 opened Aug 7, 2023 by hexhowells
4
Parameter iterator
#300 opened Aug 3, 2023 by nomadscientist
Scanpy Parameter Iterator issues
#295 opened Jun 8, 2023 by wee-snufkin
Errors in sceasy when converting from RDS Seurat
#293 opened Apr 26, 2023 by quacksawbones
2
Update sceasy to 0.0.7 in Galaxy
#292 opened Apr 26, 2023 by quacksawbones
2
Score cell cycle and other gene sets with scanpy persist-seq Requests from Persist-Seq
#284 opened Feb 8, 2023 by pcm32
Scanpy scrubblet by default runs on all samples, best practice is to run per sample persist-seq Requests from Persist-Seq
#283 opened Jan 27, 2023 by pcm32
Scanpy marker genes should have an option not to output the AnnData object again persist-seq Requests from Persist-Seq
#282 opened Jan 20, 2023 by pcm32
1
Scanpy find marker genes should have an option to produce marker genes lists using gene symbols persist-seq Requests from Persist-Seq
#281 opened Jan 20, 2023 by pcm32
Filtering per batch and by percentiles persist-seq Requests from Persist-Seq
#280 opened Jan 17, 2023 by pcm32
2 tasks
Padding of embedding numbering on AnnData Operations persist-seq Requests from Persist-Seq
#279 opened Jan 12, 2023 by pcm32
1
Non-unique gene names on AnnData affects some usages persist-seq Requests from Persist-Seq
#278 opened Jan 12, 2023 by pcm32
3
atlas-fastq-provider: Retrieval method should be removed/disabled depending on selected Resource or directory
#267 opened Oct 13, 2022 by anilthanki
NOT URGENT AT ALL minor issue with Alevin and GTF
#234 opened Jun 4, 2021 by nomadscientist
AnnData --> max format
#229 opened Apr 30, 2021 by nomadscientist
4
SCEasy - AnnData-->Seurat
#225 opened Mar 25, 2021 by nomadscientist
@pcm32
6
Making Seurat tools usable for researchers
#222 opened Mar 18, 2021 by nomadscientist
5 tasks
@pcm32
6
DropletUtils plot labels
#215 opened Dec 18, 2020 by nomadscientist
Improvement proposal for gtf2featureAnnotation.R (GTF2GeneList tool)
#209 opened Nov 19, 2020 by cgirardot
3
‘package ‘GenomeInfoDb’ could not be loaded’
#208 opened Nov 19, 2020 by cgirardot
6
Some tools are missing test-data
#128 opened Mar 5, 2020 by Slugger70
1
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