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AnnData --> max format #229

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nomadscientist opened this issue Apr 30, 2021 · 4 comments

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nomadscientist commented Apr 30, 2021

Is there a galaxy tool for AnnData --> mtx format? This is rather critical for moving from Galaxy-Scanpy --> Cytoscape....

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nomadscientist commented Apr 30, 2021

@pcm32 @pinin4fjords

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pcm32 commented Apr 30, 2021

You could misuse the filtering tools, without imposing any active restrictions, for this I think.

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pcm32 commented Apr 30, 2021

They have an option for outputting the filtered matrix.

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pcm32 commented Jul 1, 2021

Did you try this option @nomadscientist ? To close this issue.

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