Skip to content
@ebi-gene-expression-group

EBI Gene Expression Group

Popular repositories Loading

  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 40 20

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 31 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 26 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 18 4

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 16 14

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 14 2

Repositories

Showing 10 of 182 repositories
  • index-bioentities Public

    Scripts to automate building and populating the bioentities collection

    ebi-gene-expression-group/index-bioentities’s past year of commit activity
    Shell 0 0 0 1 Updated Nov 22, 2024
  • atlas-web-single-cell Public

    Single Cell Expression Atlas web application

    ebi-gene-expression-group/atlas-web-single-cell’s past year of commit activity
    Java 5 Apache-2.0 5 79 8 Updated Nov 22, 2024
  • atlas-web-core Public

    Business logic for single cell and bulk Expression Atlas and for the up-and-coming Expression Atlas API

    ebi-gene-expression-group/atlas-web-core’s past year of commit activity
    Java 0 1 4 0 Updated Nov 22, 2024
  • atlas-components Public

    Front end components of Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/atlas-components’s past year of commit activity
    JavaScript 3 3 15 1 Updated Nov 22, 2024
  • scxa-control-workflow Public

    Master Nextflow workflow for running each component of the SMART-seq and droplet SCXA pipelines

    ebi-gene-expression-group/scxa-control-workflow’s past year of commit activity
    R 4 2 4 1 Updated Nov 20, 2024
  • scxa-tertiary-workflow Public

    Tertiary component for SCXA workflows

    ebi-gene-expression-group/scxa-tertiary-workflow’s past year of commit activity
    Nextflow 0 0 0 1 Updated Nov 20, 2024
  • atlas-web-bulk Public

    Bulk Expression Atlas web application

    ebi-gene-expression-group/atlas-web-bulk’s past year of commit activity
    Java 0 Apache-2.0 1 35 4 Updated Nov 19, 2024
  • submissions-tracking-interface Public

    An interface for browsing the ArrayExpress submissions tracking database

    ebi-gene-expression-group/submissions-tracking-interface’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 19, 2024
  • curated-metadata Public

    Relevant curated metadata to be consumed by Atlas Prod pipelines and Atlas Web Applications

    ebi-gene-expression-group/curated-metadata’s past year of commit activity
    Python 2 0 0 0 Updated Nov 15, 2024
  • galaxy-gxa-tools-setup Public

    Standard tool installation for GXA Galaxy instances

    ebi-gene-expression-group/galaxy-gxa-tools-setup’s past year of commit activity
    Python 0 2 0 0 Updated Nov 9, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…