v0.0.20

Highlight

• New movement dataset type to store bounding boxes. Tracked bounding boxes can be loaded from files in VGG Image Annotator format or constructed from Numpy arrays. Spearheaded by @sfmig 🎉

What's Changed

Support for bounding boxes

• Add a ValidVIAtracksCSV class (2/4) by @sfmig in #219
• Small edits to ValidBboxesDataset (1/4) by @sfmig in #230
• Getting started docs update for bboxes by @sfmig in #245
• Load bboxes dataset from VIA tracks file (3/4) by @sfmig in #229
• Adapt move accessor to bboxes datasets by @sfmig in #255
• Simplify and expand filtering tests for bboxes by @sfmig in #267
• Extend tests for bboxes datasets by @sfmig in #246
• added new movement datasets figure, with caption by @niksirbi in #286
• Small refactor to filtering tests by @sfmig in #287
• Simplify and expand kinematic tests for bboxes by @sfmig in #265

New vector utilities

• Add utilities for vector magnitude and normalisation by @niksirbi in #243

Housekeeping and docs improvements

• Add citation information by @adamltyson in #240
• Refactor names and fix docs formatting in validators by @lochhh in #251
• Pin pandas version for Py3.12 tests by @sfmig in #259
• Fix tox requires section by @sfmig in #261
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #258
• Update setup docs by @lochhh in #264
• Revert "Pin pandas version for Py3.12 tests" by @sfmig in #272
• Configure intersphinx by @lochhh in #269
• Suggestion to treat warnings as errors in sphinx-build by @sfmig in #256
• Refactor derivative by @lochhh in #270
• Remove defaults from test_and_deploy.yml by @sfmig in #275
• Updated movement overview figure by @niksirbi in #288
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #296
• Fix xarray FutureWarning about dims vs sizes by @niksirbi in #297

Full Changelog: v0.0.19...v0.0.20

v0.0.19

What's Changed

For users

Changes in user-facing interface:

• Refactor filtering module to take DataArrays as input by @lochhh in #209

Bugfix:

• Accessor compute_ to only validate required position data variable by @lochhh in #206

For developers

Changes in code architecture, aiming at improving ease of contribution and maintainability.

• Refactor validators by @sfmig in #204
• Move logging.py inside utils by @niksirbi in #216
• Refactor validators tests by @sfmig in #207
• Make video download optional for sample datasets by @niksirbi in #224
• Re-organise API reference by @niksirbi in #213

Paving the way for upcoming features:

• Add a ValidBboxesDataset class by @sfmig in #201
• Add bboxes sample data by @sfmig in #231

Housekeeping:

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #202
• Update supported Python versions by @niksirbi in #208
• Use raw string for ASCII art in CLI entrypoint by @lochhh in #212
• Add missing init.py files by @niksirbi in #215
• Update python version in README.md by @niksirbi in #221
• Added ruff rule to check for numpy2.0 compatibility by @niksirbi in #227
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #233

Full Changelog: v0.0.18...v0.0.19

v0.0.18

What's Changed

• Tutorial polar coordinates by @sfmig in #180
• Suggestion to rename ValidPosesCSV to ValidDeepLabCutCSV by @sfmig in #195
• Added example using median_filter() and savgol_filter() by @niksirbi in #193
• Refactored modules related to input-output by @niksirbi in #194

Full Changelog: v0.0.17...v0.018

v0.0.17

What's Changed

• Unpin sphinx version in docs requirements by @niksirbi in #183
• Fix installation link and add quick install by @sfmig in #185
• Suggestion to rename private loader by @sfmig in #187
• Rename roadmap -> roadmaps in docs by @sfmig in #188
• Added new smoothing functions to API index by @ivanvrlg in #189

New Contributors

• @ivanvrlg made their first contribution in #189

Full Changelog: v0.0.16...v0.0.17

v0.0.16

What's Changed

New features

• Polar kinematics by @lochhh in #155
• Support video and frames files associated with sample data by @niksirbi in #171
• Add CLI entrypoint by @lochhh in #176
• Implement Median and Savitzky-Golay Filters by @b-peri in #163

Interface changes

• Rename pose_tracks to position by @niksirbi in #149
• Refactor accessor to provide methods instead of properties by @lochhh in #174

Documentation

• Define the "movement dataset" and reorganise the Getting Started section by @niksirbi in #177

Housekeeping

• use Dataset.sizes instead of Dataset.dims for getting dimension sizes by @niksirbi in #153
• add merge_group as workflow trigger by @niksirbi in #154
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #157
• Overhaul linting and formatting by @niksirbi in #156
• Add viz extras to xarray dependency by @niksirbi in #161
• Enforce linting of docstrings by @niksirbi in #165
• Remove cibuildwheel config by @adamltyson in #169
• Changed macos runners for GitHub CI by @niksirbi in #170
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #173
• update pypi dev status from pre-alpha to alpha by @niksirbi in #172

New Contributors

• @adamltyson made their first contribution in #169

Full Changelog: v0.0.15...v0.0.16

v0.0.15

What's Changed

• Add and configure codespell by @niksirbi in #143
• Show short-term milestone as checklist by @niksirbi in #144
• Kinematics tutorial by @sfmig in #135

New Contributors

• @sfmig made their first contribution in #135

Full Changelog: v0.0.14...v0.0.15

v0.0.14

What's Changed

• Add binder configuration and dependencies by @niksirbi in #142

Full Changelog: v0.0.13...v0.0.14

v0.0.13

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #99
• Update datasets.py by @b-peri in #86
• Fix unreadable unwriteable fixtures for Windows by @lochhh in #103
• Remove pytables as a conda dependency by @niksirbi in #104
• Use the updated upload_pypi action by @niksirbi in #108
• Provide a generic load_poses.from_file() function #107 by @DhruvSkyy in #110
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #111
• Reorganise Accessor by @lochhh in #122
• Compute locomotion features by @lochhh in #106
• Include M1 runners in CI and update install instructions accordingly by @niksirbi in #125
• Add dependabot config by @lochhh in #128
• Bump actions/cache from 3 to 4 by @dependabot in #130
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #131
• Add codecov token to test_and_deploy.yml by @niksirbi in #129
• add setup-miniconda action and conda install pytables (instead of hdf5) by @niksirbi in #133
• Implement functions to drop and interpolate over low-confidence datapoints by @b-peri in #116
• Add tables pip package to docs requirements by @niksirbi in #137

New Contributors

• @b-peri made their first contribution in #86
• @dependabot made their first contribution in #130

Full Changelog: v0.0.12...v0.0.13

v0.0.12

What's Changed

• Export SLEAP .h5 analysis files by @lochhh in #88
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #94
• Fix admonition rendering in README by @niksirbi in #95
• Added function to load poses from LightningPose by @DhruvSkyy in #92
• Updated website with images and branding by @niksirbi in #96

Full Changelog: v0.0.11...v0.0.12

v0.0.11

What's Changed

• Added LightningPose data to pooch dataset registry by @niksirbi in #87
• Add support for loading "trackless" SLEAP files by @lochhh in #90

Full Changelog: v0.0.10...v0.0.11