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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    Python tools for analysing body movements across space and time

    Python 103 8

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    17 1

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 14 3

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 22 3

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    Python 13

Repositories

Showing 10 of 53 repositories
  • movement Public

    Python tools for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 103 BSD-3-Clause 8 81 12 Updated Oct 31, 2024
  • translocator-models Public

    Evaluate the model for the translocator project

    neuroinformatics-unit/translocator-models’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Oct 31, 2024
  • fancylog Public

    Fancier logging with python.

    neuroinformatics-unit/fancylog’s past year of commit activity
    Python 12 BSD-3-Clause 4 5 0 Updated Oct 29, 2024
  • slurmio Public

    Python tools to read SLURM job parameters.

    neuroinformatics-unit/slurmio’s past year of commit activity
    Python 7 MIT 1 0 0 Updated Oct 29, 2024
  • spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 13 BSD-3-Clause 0 25 3 Updated Oct 28, 2024
  • rsp-vision Public archive

    Analysis and visualization of calcium imaging data from retrosplenial cortex

    neuroinformatics-unit/rsp-vision’s past year of commit activity
    Python 8 BSD-3-Clause 0 23 0 Updated Oct 28, 2024
  • python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    neuroinformatics-unit/python-cookiecutter’s past year of commit activity
    Python 22 BSD-3-Clause 3 14 1 Updated Oct 28, 2024
  • course-extracellular-ephys-analysis Public

    Covering how to build electrophysiology pipelines with SpikeInterface

    neuroinformatics-unit/course-extracellular-ephys-analysis’s past year of commit activity
    Python 5 MIT 0 0 0 Updated Oct 25, 2024
  • derotation Public

    Derotate images acquired via 2-photon or 3-photon calcium imaging

    neuroinformatics-unit/derotation’s past year of commit activity
    Python 7 BSD-3-Clause 0 14 4 Updated Oct 25, 2024
  • .github Public
    neuroinformatics-unit/.github’s past year of commit activity
    6 MIT 0 0 0 Updated Oct 8, 2024
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