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@compomics

Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

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  1. ThermoRawFileParser ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 185 50

  2. DeepLC DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    Python 55 19

  3. ms2rescore ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 51 15

  4. compomics-utilities compomics-utilities Public

    Open source Java library for computational proteomics

    Java 30 17

  5. peptide-shaker peptide-shaker Public

    Interpretation of proteomics identification results

    Java 48 18

  6. searchgui searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    Java 42 15

Repositories

Showing 10 of 93 repositories
  • Peptonizer2000 Public

    Confidence for taxonomic analysis in metaproteomics. Get ready to peptonize!

    compomics/Peptonizer2000’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Nov 1, 2024
  • psm_utils Public

    Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

    compomics/psm_utils’s past year of commit activity
    Python 25 Apache-2.0 7 6 (2 issues need help) 2 Updated Nov 1, 2024
  • DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    compomics/DeepLC’s past year of commit activity
    Python 55 Apache-2.0 19 5 0 Updated Oct 29, 2024
  • mumble Public

    Finding the perfect modification for your mass shift

    compomics/mumble’s past year of commit activity
    Python 2 Apache-2.0 1 1 1 Updated Oct 29, 2024
  • ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    compomics/ms2rescore’s past year of commit activity
    Python 51 Apache-2.0 15 12 4 Updated Oct 29, 2024
  • ms2rescore-rs Public

    Rust functionality for the MS²Rescore package

    compomics/ms2rescore-rs’s past year of commit activity
    Rust 2 Apache-2.0 0 0 0 Updated Oct 24, 2024
  • ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    compomics/ThermoRawFileParser’s past year of commit activity
    C# 185 Apache-2.0 50 14 1 Updated Oct 22, 2024
  • ms2pip Public

    MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

    compomics/ms2pip’s past year of commit activity
    HTML 38 Apache-2.0 18 13 4 Updated Oct 1, 2024
  • lesSDRF Public
    compomics/lesSDRF’s past year of commit activity
    Jupyter Notebook 6 Apache-2.0 7 1 2 Updated Sep 27, 2024
  • molexpress Public

    Graph Neural Networks with Keras 3

    compomics/molexpress’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 19, 2024
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