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1. compomics/ms2pip compomics/ms2pip Public

   MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

   HTML 38 18

2. compomics/DeepLC compomics/DeepLC Public

   DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

   Python 55 19

3. compomics/ms2rescore compomics/ms2rescore Public

   Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

   Python 51 15

4. compomics/psm_utils compomics/psm_utils Public

   Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

   Python 25 7

5. HUPO-PSI/mzSpecLib HUPO-PSI/mzSpecLib Public

   mzSpecLib: A standard format to exchange/distribute spectral libraries

   Python 24 14

6. cascade-config cascade-config Public

   Cascading Python configuration from the CLI and config files

   Python 1