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    25 repositories

    • znamlab.github.io

      Public
      Znamenskiy lab website
      SCSS
      •
      MIT License
      •2•0•1•3•Updated Oct 31, 2024Oct 31, 2024

    • 2p-preprocess

      Public
      Tools for preprocessing 2p calcium imaging data
      Python
      •0•1•2•1•Updated Oct 28, 2024Oct 28, 2024

    • v1_depth_map

      Public
      Analysis code for 2p imaging for 3d vision project
      Jupyter Notebook
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • znamutils

      Public
      Common utility functions for Znamenskiy's lab projects
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • cottage_analysis

      Public
      Potentially temporary repository to use DLC to track eye position
      Jupyter Notebook
      •
      MIT License
      •0•0•4•1•Updated Oct 2, 2024Oct 2, 2024

    • vis-stim-depth

      Public
      Codes for visual stimulation for depth mapping
      C#
      •0•1•2•0•Updated Sep 27, 2024Sep 27, 2024

    • wayla

      Public
      What are you looking at? A gaze reconstruction package for mice.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • flexiznam

      Public
      Znam lab tool to interact with flexilims
      Python
      •
      MIT License
      •0•0•12•0•Updated Sep 27, 2024Sep 27, 2024

    • flexilims

      Public
      Python wrappers around the flexilims API
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • image-tools

      Public
      Simple utilities to work with images
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • bg-atlasapi

      Public
      A lightweight python module to interact with atlases for systems neuroscience
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •33•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • python-cookiecutter

      Public
      Utility to create a basic Python project structure with tests, CI etc.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • senses-in-motion

      Public
      Senses in Motion Symposium website
      SCSS
      •
      MIT License
      •1•0•0•0•Updated Mar 5, 2024Mar 5, 2024

    • pymcms

      Public
      Wrapper to interact with MCMS API
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 16, 2024Jan 16, 2024

    • TIFFStack

      Public
      Load TIFF files into matlab fast, with lazy loading
      MATLAB
      •
      Other
      •20•0•0•0•Updated May 3, 2023May 3, 2023

    • .github

      Public
      0•0•0•0•Updated Apr 18, 2023Apr 18, 2023

    • DeepLabCut

      Public
      Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
      Python
      •
      GNU Lesser General Public License v3.0
      •1.7k•0•0•0•Updated Dec 2, 2022Dec 2, 2022

    • brainglobe-napari-io

      Public
      Read and write files from the BrainGlobe neuroanatomy suite
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Mar 14, 2022Mar 14, 2022

    • rt_model_orsolic

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Mar 11, 2022Mar 11, 2022

    • bonsai

      Public
      The compiler, IDE, and standard library for the Bonsai visual programming language for reactive systems
      C#
      •
      MIT License
      •29•0•0•0•Updated Jan 15, 2022Jan 15, 2022

    • ScanImageTools

      Public
      MATLAB tools for running imaging experiments with ScanImage
      MATLAB
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated May 12, 2021May 12, 2021

    • microscope-control

      Public
      Utilities for two-photon and widefield imaging
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 6, 2021Apr 6, 2021

    • BonVision

      Public
      BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of Behavioural Neuroscience in collaboration with NeuroGEARS.
      C#
      •
      MIT License
      •8•0•0•0•Updated Mar 12, 2021Mar 12, 2021

    • bg-space

      Public
      Anatomical space conventions made easy.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated Feb 19, 2021Feb 19, 2021

    • ast_model

      Public
      Asymmetric Student-t model for neuropil decontamination
      MATLAB
      •
      MIT License
      •2•0•0•0•Updated Jul 5, 2019Jul 5, 2019