Repositories list

• aind-behavior-curriculum

  Public
  Starter repository for behavior base primitives.

  Python

  •

  MIT License

  •0•0•16•6•Updated Dec 23, 2024Dec 23, 2024

• aind-ephys-job-dispatch

  Public
  Capsule to dispatch ephys jobs in CO pipeline

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

• dynamic-foraging-task

  Public
  Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

  Python

  •

  MIT License

  •4•6•170•4•Updated Dec 23, 2024Dec 23, 2024

• dynamicrouting-decoding

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 21, 2024Dec 21, 2024

• foraging-behavior-browser

  Public
  Foraging behavior browser (streamlit)

  Python

  •

  MIT License

  •2•2•14•0•Updated Dec 21, 2024Dec 21, 2024

• aind-ophys-dff

  Public
  Python

  •

  MIT License

  •0•0•0•1•Updated Dec 20, 2024Dec 20, 2024

• aind-ophys-extraction-suite2p

  Public
  Combines cellpose and suite2p to extract sources, i.e. ROIs and their traces.

  Python

  •

  MIT License

  •0•0•3•1•Updated Dec 20, 2024Dec 20, 2024

• aind-ophys-motion-correction

  Public
  Python

  •

  MIT License

  •0•1•13•1•Updated Dec 20, 2024Dec 20, 2024

• aind-morphology-utils

  Public
  Python

  •

  MIT License

  •0•0•1•3•Updated Dec 20, 2024Dec 20, 2024

• aind-ophys-decrosstalk-roi-images

  Public
  Python

  •

  MIT License

  •0•0•12•1•Updated Dec 20, 2024Dec 20, 2024

• aind-fip-qc-raw

  Public
  a capsule to generate QC based on fip raw data asest

  Python

  •

  MIT License

  •0•0•1•0•Updated Dec 20, 2024Dec 20, 2024

• aind-fip-dff

  Public
  This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

  Python

  •

  MIT License

  •0•0•4•0•Updated Dec 20, 2024Dec 20, 2024

• aind-multiplane-ophys-pipeline-without-splitting

  Public
  Nextflow

  •

  MIT License

  •0•0•1•0•Updated Dec 20, 2024Dec 20, 2024

• aind-exaspim-soma-detection

  Public
  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Dec 20, 2024Dec 20, 2024

• aind-ophys-classifier

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• Aind.Behavior.ExperimentLauncher

  Public
  Source for for a minimal framework that can be used to build experimental interfaces

  aind-behavior

  Python

  •

  MIT License

  •0•0•9•1•Updated Dec 20, 2024Dec 20, 2024

• Aind.Behavior.Services

  Public
  A repository containing code for data acquisition and processing for AIND behavior rigs.

  aind-behavior

  C#

  •

  MIT License

  •0•0•11•2•Updated Dec 20, 2024Dec 20, 2024

• Aind.Behavior.CurriculumTemplate

  Public
  A template of a repository to be used for defining, running and interfacing with a behavior curriculum

  aind-behavior

  Python

  •

  MIT License

  •0•0•2•0•Updated Dec 20, 2024Dec 20, 2024

• aind-multiplane-ophys-pipeline

  Public
  Nextflow

  •

  MIT License

  •0•0•3•0•Updated Dec 20, 2024Dec 20, 2024

• aind-ephys-spikesort-kilosort4

  Public
  CodeOcean capsule for ephys spike sorting with Kilosort4

  Python

  •

  MIT License

  •0•1•0•0•Updated Dec 20, 2024Dec 20, 2024

• aind-subject-nwb

  Public
  Python

  •

  MIT License

  •0•0•1•1•Updated Dec 20, 2024Dec 20, 2024

• aind-ecephys-nwb

  Public
  Code Ocean capsule to create an NWB file for Neuropixels data

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• aind-units-nwb

  Public
  Code Ocean capsule to export ephys units data to NWB

  Python

  •

  MIT License

  •0•0•2•0•Updated Dec 20, 2024Dec 20, 2024

• aind-ephys-results-collector

  Public
  Code Ocean capsule for result collection

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• aind-ephys-visualization

  Public
  CodeOcean capsule for ephys visualization

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• aind-ephys-unit-classifier

  Public
  Classify spike sorting units

  Python

  •

  MIT License

  •0•1•0•0•Updated Dec 20, 2024Dec 20, 2024

• aind-ephys-curation

  Public
  Code Ocean capsule for ephys curation

  Python

  •

  MIT License

  •0•1•0•0•Updated Dec 20, 2024Dec 20, 2024

• aind-ephys-postprocessing

  Public
  CodeOcean capsule for ephys post-processing

  Python

  •

  MIT License

  •0•0•1•0•Updated Dec 20, 2024Dec 20, 2024

• aind-ephys-preprocessing

  Public
  CodeOcean capsule for ephys preprocessing

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• Aind.Behavior.CookieCutter.Template

  Public
  A cookiecutter template for Aind.Behavior repositories

  aind-behavior

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024