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Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  4. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

  5. dynamic-foraging-task dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    Python 5 4

  6. exa-spim-hardware exa-spim-hardware Public

    5

Repositories

Showing 10 of 273 repositories
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 23 MIT 17 34 6 Updated Nov 1, 2024
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging’s past year of commit activity
    C# 2 MIT 0 23 1 Updated Nov 1, 2024
  • aind-behavior-video-transformation Public

    Library to manage compression and transformation of behavior videos

    AllenNeuralDynamics/aind-behavior-video-transformation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 1, 2024
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff’s past year of commit activity
    Python 0 MIT 0 4 0 Updated Nov 1, 2024
  • AIND-ophys-mFISH-design-matrix Public

    Building design matrices for ophys-mFISH datasets from AIND

    AllenNeuralDynamics/AIND-ophys-mFISH-design-matrix’s past year of commit activity
    Dockerfile 0 MIT 0 0 1 Updated Oct 31, 2024
  • harp.device.environment-sensor Public

    harp-compliant humidity, pressure, and temperature sensor

    AllenNeuralDynamics/harp.device.environment-sensor’s past year of commit activity
    C 0 MIT 0 4 1 Updated Oct 31, 2024
  • aind-watchdog-service Public

    Data staging service that prepares acquistion data for cloud upload to Amazon S3 and Code Ocean processing.

    AllenNeuralDynamics/aind-watchdog-service’s past year of commit activity
    Python 2 MIT 1 20 1 Updated Oct 31, 2024
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 25 2 Updated Oct 31, 2024
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 78 (1 issue needs help) 7 Updated Oct 31, 2024
  • aind-ophys-extraction-suite2p Public

    Combines cellpose and suite2p to extract sources, i.e. ROIs and their traces.

    AllenNeuralDynamics/aind-ophys-extraction-suite2p’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Oct 31, 2024
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