Dashboard 📊✨

.gitignore

@@ -90,3 +90,4 @@ venv/
 *.hdf5
 *.pickle
 *.obsidian
+*.csv

MANIFEST.in

@@ -4,6 +4,7 @@ include *.py
 
 recursive-include docs *.md
 recursive-include docs *.png
+recursive-include docs *.svg
 
 exclude *.yml
 exclude *.cruft.json

demo_dash.py

@@ -0,0 +1,5 @@
+from rsp_vision.dashboard.app import get_app
+
+if __name__ == "__main__":
+    app = get_app()
+    app.run_server(debug=True)

docs/Analysis choices and permutations.md

@@ -0,0 +1,15 @@
+## Responsive
+- Static chosen as baseline, Grey could also be choosen
+- Length and position of the windows to consider in the baseline and response period
+- Mean or median of the window?
+	- Mean for KW and Sign tests
+	- Median for Magnitude
+
+
+## Gaussian fits
+- Median subtracted response is the MEDIAN OVER THE MEAN subtracted signals
+- When pooling direction unsure if to take mean or median
+
+
+
+![[Responsiveness analysis diagram.svg]]

docs/reproduce_plots.md

@@ -0,0 +1,16 @@
+# Some example plots that are generated
+
+## SF/TF Traces
+### Matlab version
+<img width="800" src="https://github.com/neuroinformatics-unit/load-suite2p/blob/dashboard-plots/docs/images/MATLAB%20sf%20tf%20traces.png">
+
+### Python version
+<img width="800" src="https://github.com/neuroinformatics-unit/load-suite2p/blob/dashboard-plots/docs/images/Python%20sf%20tf%20traces.png">
+
+## Heatmap response matrix and Gaussian fits
+ROI 8, direction 90, data: `AK_1111739_hL_RSPd_monitor_front`
+### Matlab version
+<img width="800" src="https://github.com/neuroinformatics-unit/load-suite2p/blob/dashboard-plots/docs/images/MATLAB%20heatmap%20response%20matrix.png">
+
+### Python version
+<img width="800" src="https://github.com/neuroinformatics-unit/load-suite2p/blob/dashboard-plots/docs/images/Python%20heatmap%20response%20matrix.png">

pyproject.toml

@@ -48,6 +48,7 @@ dev = [
   "pre-commit",
   "ruff",
   "setuptools_scm",
+  "tqdm", # to generate mock data
 ]
 
 [build-system]