Minimal Snakemake workflow #1
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…g-automation into dev
…g-automation into dev
lauraporta
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Description
What is this PR
Why is this PR needed?
Updates with a working initial part of a workflow that can be used for multi-photon imaging pipelines.
What does this PR do?
Adds basic Snakemake workflow to read tiffs files from given folder patterns, writes new files according to Neuroblueprint standard, and runs arbitrary preprocessing steps that could be required before image registration.
References
#2
How has this PR been tested?
In test locally, unit tests to be built
Is this a breaking change?
No
Does this PR require an update to the documentation?
TODO
Checklist: