Update workflows and add dependabot yml

.github/dependabot.yml

@@ -0,0 +1,11 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+
+version: 2
+updates:
+  - package-ecosystem: "github-actions" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "monthly"

.github/workflows/docs_build_and_deploy.yml

@@ -1,4 +1,4 @@
-name: Build Sphinx docs and deploy to GitHub Pages
+name: Docs
 
 # Generate the documentation on all merges to main, all pull requests, or by
 # manual workflow dispatch. The build job can be used as a CI check that the
@@ -12,23 +12,35 @@ on:
     tags:
       - '*'
   pull_request:
+  merge_group:
   workflow_dispatch:
 
 jobs:
+  linting:
+    # scheduled workflows should not run on forks
+    if: (${{ github.repository_owner == 'neuroinformatics-unit' }}) || (${{ github.event_name != 'schedule' }})
+    runs-on: ubuntu-latest
+    steps:
+      - uses: neuroinformatics-unit/actions/lint@v2
+
   build_sphinx_docs:
     name: Build Sphinx Docs
     runs-on: ubuntu-latest
     steps:
-      - uses: neuroinformatics-unit/actions/build_sphinx_docs@v2
+      - uses: neuroinformatics-unit/actions/build_sphinx_docs@main
+        with:
+          python-version: 3.11
+          use-make: true
 
   deploy_sphinx_docs:
     name: Deploy Sphinx Docs
     needs: build_sphinx_docs
     permissions:
       contents: write
-    if: github.event_name == 'push' && github.ref_type == 'tag'
+    if: (github.event_name == 'push' && github.ref_type == 'tag') || github.event_name == 'workflow_dispatch'
     runs-on: ubuntu-latest
     steps:
-      - uses: neuroinformatics-unit/actions/deploy_sphinx_docs@v2
+      - uses: neuroinformatics-unit/actions/deploy_sphinx_docs@main
         with:
           secret_input: ${{ secrets.GITHUB_TOKEN }}
+          use-make: true

.github/workflows/test_and_deploy.yml

@@ -7,6 +7,7 @@ on:
     tags:
       - '*'
   pull_request:
+  merge_group:
 
 jobs:
   linting:
@@ -27,20 +28,23 @@ jobs:
     strategy:
       matrix:
         # Run all supported Python versions on linux
-        python-version: ["3.8", "3.9", "3.10"]
+        python-version: ["3.10", "3.11", "3.12"]
         os: [ubuntu-latest]
-        # Include one windows and macos run
+        # Include 1 Intel macos (13) and 1 M1 macos (latest) and 1 Windows run
         include:
+        - os: macos-13
+          python-version: "3.11"
         - os: macos-latest
-          python-version: "3.10"
+          python-version: "3.11"
         - os: windows-latest
-          python-version: "3.10"
+          python-version: "3.11"
 
     steps:
       # Run tests
       - uses: neuroinformatics-unit/actions/test@v2
         with:
           python-version: ${{ matrix.python-version }}
+          secret-codecov-token: ${{ secrets.CODECOV_TOKEN }}
 
   build_sdist_wheels:
     name: Build source distribution