v0.5.3

Small fixes related to broken NeuroBlueprint links and textual API changes.

What's Changed

• Fix broken Neuroblueprint link by @JoeZiminski in #444
• Fix dark mode after textual update by @JoeZiminski in #445
• Fix tests after textual changes by @JoeZiminski in #446
• Fix Out of Bounds error during testing. by @JoeZiminski in #447

Full Changelog: v0.5.2...v0.5.3

v0.5.2

This version fixes a bug introduces by a change in the textual app, and introduces running the CI weekly via cron job to pick up such regressions in future.

What's Changed

• Fix error from new textualize from dismiss() in call_after_refresh. by @JoeZiminski in #412
• Make CI run with weekly cron job. by @JoeZiminski in #414

Full Changelog: v0.5.1...v0.5.2

v0.5.1

This release makes it possible to use convenience tags (e.g. @DATE@) in name templates, as well as other small improvements.

What's Changed

• Suggested num respect name template by @JoeZiminski in #405
• Allow tags in name template regexp. by @JoeZiminski in #404
• Unpin sphinx 7.2 by @JoeZiminski in #398
• Remove unused sphinx-argparse dependency. by @JoeZiminski in #400
• Only update pre-commit monthly by @adamltyson in #403

Full Changelog: v0.5.0...v0.5.1

v0.5.0

This release includes various fixes and test improvements. Additionally, create_folders now returns a dictionary of paths split by datatype.

What's Changed

• Add _check_top_level_folder option. by @JoeZiminski in #381
• Deprecate Python 3.8 and add 3.12 by @JoeZiminski in #387
• Improve developer install docs. by @JoeZiminski in #386
• Add community, contributing guidelines. by @JoeZiminski in #385
• Fix logger name regression by @JoeZiminski in #396
• Update workflow file to install datashuttle. by @JoeZiminski in #394
• Make create folders logging optional by @JoeZiminski in #379
• Create folders return split by datatype by @JoeZiminski in #382

Full Changelog: 0.4.0...v0.5.0

Crystallising the API (v0.4.0)

Crystallising the API

• Rename transfer methods. by @JoeZiminski in #360
• Rename get_next_sub_number and get_next_ses_number. by @JoeZiminski in #359
• Remove transfer options from make config file by @JoeZiminski in #361
• Remove central local path exist requirement by @JoeZiminski in #365

A new 'overwrite existing files' option

• Extend overwrite option by @JoeZiminski in #362

Reworking the documentation

• Update README.md for v0.3.0 by @JoeZiminski in #357
• Rework of docs before v0.4.0 by @JoeZiminski in #367

Full Changelog: v0.3.0...0.4.0

The graphical interface release (v0.3.0)

The terminal user interface (TUI)

• Add TUI tests. by @JoeZiminski in #310
• Terminal user interface. by @JoeZiminski @b-peri in #231
• Add logging tab. by @JoeZiminski in #311

Extra validations

• Validate the length of subject or session values. by @JoeZiminski in #148
• Validate --sub-names when --ses_names is passed. by @JoeZiminski in #204
• Refactor validation-related code. by @JoeZiminski in #261

Other new features

• Add rclone check function. by @JoeZiminski in #269
• Add name templates. by @JoeZiminski in #278

Genreal housekeeping

• Refactor and tidy up TUI by @JoeZiminski in #308
• Update project description. by @JoeZiminski in #258
• Add zulip chat icon to website. by @JoeZiminski in #266
• Add more exception types (not just raising BaseException). by @JoeZiminski in #247
• Add unit test for test_get_values_from_bids_formatted_name(). by @JoeZiminski in #257
• Improve get next sub or ses funcs [2] by @JoeZiminski in #251
• Replace update-config with update-config-file that takes multiple options at once. [3] by @JoeZiminski in #260
• General codebase refactor. [5] by @JoeZiminski in #264
• Change DataShuttle public 'shower' functions to getters. [6] by @JoeZiminski in #271
• Small general refactorings and documentation. [7] by @JoeZiminski in #273
• Small fixes from PR reviews. by @JoeZiminski in #286
• Use updated upload_pypi action by @niksirbi in #307
• PR of individual commits to fix small issues. by @JoeZiminski in #314
• Updates to the TUI configuration page by @JoeZiminski in #325
• Deprecate 'supply_config_file'. by @JoeZiminski in #342
• Reconfigure bypass validation by @JoeZiminski in #343
• Revert "Reconfigure bypass validation" by @JoeZiminski in #352
• Reconfigure bypass validation by @JoeZiminski in #353
• Remove working top level folder by @JoeZiminski in #344
• Return paths from create folders by @JoeZiminski in #345
• Remove unused cli code by @JoeZiminski in #347
• Address sonarcloud issues by @JoeZiminski in #348
• Fix unspecific error when validating names by @JoeZiminski in #349
• Docs for tui version release by @JoeZiminski in #334
• Whitelist links that linkcheck does not like. by @JoeZiminski in #254
• • Refactor the code that performs validation of --sub_names and --ses_names. by @JoeZiminski in #206

Full Changelog: v0.2.0...v0.3.0

v0.2.0

What's Changed

• Update PyPI links by @adamltyson in #168
• Update tooling to use ruff et al. by @adamltyson in #171
• codespell: workflow and some typos fixed by @yarikoptic in #176
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #178
• Add zulip chat links. by @JoeZiminski in #182
• Remove codespell from workflow as is in pre-commit. by @JoeZiminski in #189
• Format datetime as ISO8601 by @b-peri in #188
• Revert "Fix documentation." by @JoeZiminski in #192
• Change data-type to datatype by @JoeZiminski in #196
• Reformat log filename to start with ISO8601 datetime by @JoeZiminski in #195
• Raise error if local_path or central_path does not point to project_name folder. by @JoeZiminski in #183
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #205
• Fix wrong docsting and possibility to init empty path in _start_log(). by @JoeZiminski in #200
• Add verbose option to searching folders functions. by @JoeZiminski in #197
• Show existing projects by @JoeZiminski in #202
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #213
• Update pyproject.toml from flake8 to ruff. by @JoeZiminski in #219
• Type hint datatype as Union[List[str], str]. by @JoeZiminski in #222
• Rename make_sub_folders to make_folders. by @JoeZiminski in #223
• Shorten DataShuttle import path. by @JoeZiminski in #220
• Perform check that we are running in TTY terminal before getpass is… by @JoeZiminski in #201
• [Testing] Refactor all relevant tests to use base fixture class. by @JoeZiminski in #210
• Raise an error if . syntax is passed for local or central paths. by @JoeZiminski in #226
• Remove the .datashuttle_meta folder that was created in datatype folders. by @JoeZiminski in #230
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #232
• Remove use_ datatype e.g. use_behav configurations. by @JoeZiminski in #227
• Rename histology to anat and move to session level. by @JoeZiminski in #229
• [Documentation] Improve documentation by @JoeZiminski in #207
• Fix broken NeuroBlueprint links / references in README. by @JoeZiminski in #236

New Contributors

• @yarikoptic made their first contribution in #176
• @pre-commit-ci made their first contribution in #178

Full Changelog: v0.1.0...v0.2.0