started with slides for presentation

index.qmd

@@ -1,14 +1,14 @@
 ---
-title: A template presentation
-subtitle: so much fun
-author: SWC Neuroinformatics Unit
+title: Video-based analysis of animal behaviour
+subtitle: SWC/GCNU Neuroinformatics Unit
+author: Niko Sirmpilatze, Chang Huan Lo, Alessandro Felder
 execute: 
   enabled: true
 format:
     revealjs:
-        theme: [default, niu-dark.scss]
-        logo: img/logo_niu_dark.png
-        footer: "Edit this footer | 2023-07-26"
+        theme: [default, niu-light.scss]
+        logo: img/logo_niu_light.png
+        footer: "Sainsbury Wellcome Centre | 2023-11-29"
         slide-number: c
         menu:
             numbers: true
@@ -23,89 +23,95 @@ format:
         highlight-style: atom-one
         mermaid: 
           theme: neutral
-          fontFamily: arial
+          fontFamily: Arial
           curve: linear
+        title-slide-attributes: 
+          data-background-color: "#000000"
+          data-background-image: "img/swc-building.jpg" 
+          data-background-size: "cover"
+          data-background-position: "center"
+          data-background-opacity: "0.6"
     html:
-        theme: [default, niu-dark.scss]
-        logo: img/logo_niu_dark.png
-        date: "2023-07-05"
+        theme: [default, niu-light.scss]
+        logo: img/logo_niu_light.png
+        date: "2023-11-29"
         toc: true
         code-overflow: scroll
         highlight-style: atom-one
         mermaid: 
           theme: neutral
-          fontFamily: arial
+          fontFamily: Arial
           curve: linear
           margin-left: 0
         embed-resources: true
         page-layout: full
-my-custom-stuff:
-   my-reuseable-variable: "I can use this wherever I want in the markdown, and change it in only once place :)"
+links:
+   course-webpage: "https://software-skills.neuroinformatics.dev/courses/video-analysis.html"
+   gh-repo: "https://github.com/neuroinformatics-unit/course-behavioural-analysis-2023"
+   these-slides: "https://neuroifnormatics.dev/course-behavioural-analysis-2023/"
+   dropbox: "https://www.dropbox.com/scl/fo/ey7b6yrqax2olqyv1th7j/h?rlkey=u4wh2gxtbbn4g5o3s55zbx6pp&dl=0"
 ---
 
-## Contents
+## Introductions
 
-Some example slides - [also look at example RevealJS slides in the Quarto docs](https://quarto.org/docs/presentations/revealjs/)
+[Neuroinformatics Unit (NIU)](https://neuroinformatics.dev/){preview-link="true" style="text-align: center"}
 
-* Non-executable and executable code-blocks
-* bullet points with highlighting 
-* two-column slides 
-* how to include a slide from a separate MD file
-* preview and link to a webpage
+:::: {.columns}
+::: {.column width="33%"}
+![](img/niko_sirmpilatze.png)
+Niko Sirmpilatze
+:::
 
-## Just a code block, nothing gets executed...
+::: {.column width="33%"}
+![](img/chang_huan_lo.png)
+Chang Huan Lo
+:::
 
-... but there is some fancy highlighting
+:::{.column width="33%"}
+![](img/alessandro_felder.png)
+Alessandro Felder
+:::
+::::
 
-```{.python code-line-numbers="1|3|4-9"}
-from pathlib import Path
+## Course materials {.smaller}
 
-home_path = Path.home()
-if home_path.exists():
-  data_path = home_path / "data"
-else:
-  pass
-  # raise some error maybe?
-```
+#### These slides
 
-## A code block that's actually executed at render-time
+[neuroinformatics.dev/course-behavioural-analysis-2023]({{< meta links.these-slides >}})
 
-```{python}
-#| echo: true
-#| code-fold: true
+#### Course webpage
 
-from pathlib import Path
+[software-skills.neurinformatics.dev/course-behavioural-analysis-2023]({{< meta links.course-webpage >}})
 
-print("Hello world")
-```
+#### GitHub repository
 
-## You can execute code without showing that you have by using #|echo: false
-```{python}
-#| echo: false
+[github.com/neuroinformatics-unit/course-behavioural-analysis-2023]({{< meta links.gh-repo >}})
 
-from pathlib import Path
+#### Sample data
+[Dropbox link]({{< meta links.dropbox >}}) OR...
 
-print("Hello world")
-```
+`/ceph/scratch/neuroinformatics-dropoff/behav-analysis-course`
 
-{{< include slides/extra_slide.qmd >}}
+## Enter `movement`  {.smaller}
 
-## An example image
+:::: {.columns}
 
-Include an image:
+::: {.column width="55%"}
+![](img/movement-repo-screenshot.png)
+:::
 
-![](img/bg_logo_wide.png){width=900 fig-align=center}
+::: {.column width="45%"}
+Python tools for analysing body movements across space and time.
 
+- [GitHub repository](https://github.com/neuroinformatics-unit/movement)
+- [Documentation](https://movement.neuroifnormatics.dev)
+- [PyPI package](https://pypi.org/project/movement/)
+- [Zulip chat](https://neuroinformatics.zulipchat.com/#narrow/stream/406001-Movement)
+:::
 
-## Link and a preview a webpage:
+::::
 
-::: {style="text-align: center; margin-top: 1em"}
-[interoperable Python-based tools for computational neuroanatomy](https://brainglobe.info/index.html){preview-link="true" style="text-align: center"}
-:::
 
-## Use a variable several times
+{{< include slides/extra_slide.qmd >}}
 
-Variables defined in the metadata is re-useable anywhere
 
-* {{< meta my-custom-stuff.my-reuseable-variable >}}
-* {{< meta my-custom-stuff.my-reuseable-variable >}}