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renames normalise_internal_data and adds container tag
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anilthanki committed Oct 30, 2024
1 parent e960f6e commit 8342715
Showing 1 changed file with 4 additions and 1 deletion.
5 changes: 4 additions & 1 deletion main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -93,6 +93,8 @@ process scanpy_read_10x {
output:
path 'anndata.h5ad'

container 'quay.io/biocontainers/scanpy-scripts:1.1.6--pypyhdfd78af_0'

script:
"""
#ln -s $matrix matrix.mtx
Expand Down Expand Up @@ -172,7 +174,7 @@ process normalise_data {
"""
}

process normalise_data_internal {
process normalise_internal_data {
input:
path anndata

Expand Down Expand Up @@ -462,6 +464,7 @@ process run_tsne {
# Not sure if following is needed
# && mv 'embeddings_perplexity_1.tsv' embeddings.tsv
done
"""
}

process filter_failed_umap {
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