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Add matrix and analysis metadata standards (MAMS) file generation to SCXA #50

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pmb59 opened this issue Aug 14, 2024 · 0 comments
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pmb59 commented Aug 14, 2024

To increase FAIRness, we need to consider adding a metadata scheme developed for single-cell analysis is matrix and metadata standards (MAMS) as a final part of the workflow, after tertiary analysis, for the AnnData file that we generate.

In practical terms, this consists in generating a file in JSON or YAML format. This file captures relevant information about the data matrices and annotations that are produced during analysis workflows for single-cell data, and could be part of the bundle that we distribute in the main resource page and/or the FTP. For that this R package can be used:
https://single-cell-mams.github.io/rmams/

@pmb59 pmb59 added the enhancement New feature or request label Aug 14, 2024
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