Utilise threshold parameter

ebi-gene-expression-group · Sep 12, 2023 · cd2bc86 · cd2bc86
1 parent a18dbe0
commit cd2bc86
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/scmap-scmap-cluster.R b/scmap-scmap-cluster.R
@@ -73,7 +73,8 @@ scmapCluster_results <- scmapCluster(
   projection = project_sce, 
   index_list = list(
     metadata(index_sce)$scmap_cluster_index
-  )
+  ),
+  threshold = opt$threshold
 )
 
 # Output format anticipates multiple input indexes, let's assume a single input