Moves to scanpy 1.9.3

• Move to scanpy 1.9.3 and other improvements (#117)
• Change deprecated sc.read() usages for read_h5ad call (#128)
• HVG genes setting through files (#130)

v1.1.6

What's Changed

• Update setup.py to remove t-SNE dependency by @pinin4fjords in #115

Full Changelog: v1.1.5...v1.1.6

v1.1.5

What's Changed

• Add compression option to export by @pinin4fjords in #114

Full Changelog: v1.1.4...v1.1.5

v1.1.4

What's Changed

• Feature/unit tests by @irisdianauy in #111
• Feature/gzip mtx output by @pinin4fjords in #112
• Add Black format checking by @pinin4fjords in #113

New Contributors

• @irisdianauy made their first contribution in #111

Full Changelog: v1.1.3...v1.1.4

v1.1.3

• MTX export fix #110

v1.1.2

• Fix boolean columns during merges of extra info at read time #109

v1.1.1

• Temporary patch to fix a bug in Scanpy Scrublet (created by us) and relocate batch handling code #107

v1.1.0

• Add mito stats in the absence of mito filtering #104
• Batch-aware scrublet #105

v1.0.1

• Drop pin on umap-learn #103

v1.0.0

Not before time, a 1.0 release. This pins to Scanpy 1.8 since some features are dependent on that version.

• Add first basic scrublet integration #93 (this was waiting for scverse/scanpy#1741)
• Make sure that paga without basis uses color if given #100 (this PR also including BBKNN fix to match scverse/scanpy#1868).