Seurat 4.4 #96
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| name: Test Seurat workflow with CLI scripts | |
| on: [pull_request] | |
| jobs: | |
| setup: | |
| name: ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Add workspace to path | |
| run: | | |
| echo "${GITHUB_WORKSPACE}" >> $GITHUB_PATH | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: '1.4.5-0' | |
| environment-file: test-environment.yml | |
| init-shell: >- | |
| bash | |
| cache-environment: true | |
| create-args: | | |
| python=${{ matrix.python-version }} | |
| post-cleanup: 'all' | |
| - name: Run tests | |
| shell: bash -el {0} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| r-seurat-scripts-post-install-tests.sh |