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Instructions for overriding config files in the conda env. #7

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@pcm32 pcm32 commented Apr 14, 2020

Instructions for users on how to override existing config files.

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@anjaf anjaf left a comment

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Thanks, Pablo. The instructions work fine, with the exception of the first bit. I guess you have to know where your env is.

Comment on lines +14 to +15
PERL_ATLAS_ENV=$(conda env list | grep perl-atlas | awk '{ print $2 }')
echo $PERL_ATLAS_ENV
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This command didn't work. It assumes that the conda env is called "perl-atlas", right? But mine is called "atlas_curation". I had to set up the PERL_ATLAS_ENV variable manually to proceed.

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