copy lib dataset to history then use it to avoid input dataset in res…

…ult history
ebi-gene-expression-group · Jul 24, 2023 · 3a12caa · 3a12caa
1 parent 5c2086e
commit 3a12caa
Showing 1 changed file with 7 additions and 4 deletions.
diff --git a/wfexecutor/__init__.py b/wfexecutor/__init__.py
@@ -274,10 +274,13 @@ def load_input_files(gi, inputs, workflow, history):
             # We are in the presence of a simple parameter input
             inputs_for_invoke[step] = inputs[step_data['label']]
         elif step_data['label'] in inputs and 'library_id' in inputs[step_data['label']]:
-             inputs_for_invoke[step] = {
-                 'id': inputs[step_data['label']]['library_id'],
-                 'src': 'ldda'
-             }
+            upload_res = gi.histories.copy_dataset(history_id=history['id'],
+                                              dataset_id=inputs[step_data['label']]['library_id'],
+                                              source="library")
+            inputs_for_invoke[step] = {
+                 'id': upload_res['id'],
+                 'src': 'hda'
+            }
         else:
             raise ValueError("Label '{}' is not present in inputs yaml".format(step_data['label']))