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FROM continuumio/miniconda3:4.8.2 | ||
# debian | ||
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RUN apt-get update | ||
RUN apt-get install -y git bash gawk | ||
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# install conda packages atlas-experiment-metadata and perl dependencies | ||
RUN /opt/conda/bin/conda config --add channels defaults && \ | ||
/opt/conda/bin/conda config --add channels conda-forge && \ | ||
/opt/conda/bin/conda config --add channels bioconda && \ | ||
/opt/conda/bin/conda install -c ebi-gene-expression-group atlas-experiment-metadata | ||
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ENV PATH "/opt/conda/bin:/opt/conda/condabin:/bin:/sbin:/usr/bin:/usr/local/bin" | ||
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ENV ZOOMA_API_BASE=https://www.ebi.ac.uk/spot/zooma/v2/api/ | ||
ENV OLS_API_BASE=http://www.ebi.ac.uk/ols/api/ | ||
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0.1.2 | ||
0.1.4 |