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Releases: ebi-gene-expression-group/atlas-web-single-cell

v16.0.0 - annData Release

20 Sep 16:03
@ke4 ke4
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What's Changed

⭐ New Features

  • Add experiment design loading to our local env by @ke4 in #366
  • Improve build endpoint in SCXA by @ke4 in #376
  • Improve Anndata experiment page appearance by @ke4 in #397
  • Modify the summary section's margin/padding in case of Anndata experiment by @ke4 in #402
  • Integrate scxa-faceted-search-result to move the anndata icon to the title column by @lingyun1010 in #405
  • Add analysis description text for supplementary info in case of anndata by @ke4 in #407
  • anndata icon and title on scxa gene search and experiment table pages by @lingyun1010 in #419
  • Integrate ovary and testis organ anatomogram by @lingyun1010 in #417
  • Update publication list on the home page with the latest one by @ke4 in #429
  • Update latest publication date by @ke4 in #433
  • Add external data hyperlink to help page by @lingyun1010 in #459
  • Update atlas-experiment-table package for anndata by @lingyun1010 in #406

🐞 Bug Fixes

  • Fix the tsne plot option dropdown menu label issue by @lingyun1010 in #360
  • Replace lodash function with JS function by @lingyun1010 in #370
  • Fix failing unit tests by @ke4 in #386
  • Update SQL for non-priority case in cell plot by @lingyun1010 in #384
  • Fix the title of the Cell Type Wheel Heatmap by @KhalilBeldi in #396
  • Add consistency between cell plots tab and marker genes tab by @lingyun1010 in #388
  • Clean code in SingleCellBaselineExperiment by @ke4 in #423
  • Fix processing search data for cell type wheel by @ke4 in #428
  • Add species when redirect to metadata search by @ke4 in #434
  • Update scxa-gene-search-form and scxa-cell-type-wheel-heatmap to latest by @ke4 in #435
  • Set species dropdown default value to Any by @ke4 in #437
  • Decouple the experiment type with external links by @lingyun1010 in #427
  • Render big dataset with Highcharts in the Single Cell web app by @ke4 in #440
  • Change initial value for 'Species' from 'Any' to an empty value ('') by @ke4 in #443
  • Fix search button not working after an initial metadata search by @lingyun1010 in #446
  • Filter species metadata cell type wheel search on ogranism field by @lingyun1010 in #442
  • Get expression unit from the DB for Cell plots tab / Gene Expression part by @ke4 in #449
  • Update tsne plot package version and ks options by @lingyun1010 in #451
  • Fix species filter is getting ignored in the metadata search by @upendrakumbham in #448
  • Experiment unit from db for marker genes by @ke4 in #450
  • Integrate inferred cell type and cluster marker gene heatmap by @lingyun1010 in #452
  • Add more experiment to anatomogram black list by @lingyun1010 in #457
  • Add more experiment accessions to the anatomogram backlist by @ke4 in #463
  • Replace FlyBase gene search example to FBgn0003062 by @ke4 in #464

💡Other Changes

  • Improve the build-and-deploy-webapp shell script in SCXA by @ke4 in #377
  • Experiment Design backend functionality by @haideriqbal in #324
  • Update tsne-plot package by @lingyun1010 in #364
  • Refactor organism part endpoint by @ke4 in #352
  • Refactor cell types endpoint by @ke4 in #353
  • Add no build flag to local deployment by @ke4 in #414

❤️ New Contributors

Full Changelog: vzenodo...v16.0.0

Zenodo DOI release

19 Oct 10:11
5924024
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This is a release to create a DOI in Zenodo for the EA update paper 2023 -@ngeorgeebi