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Add Jenkins CI environment for bulk Expression Atlas in GCP k8s cluster #158

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Add Jenkins CI environment for bulk Expression Atlas in GCP k8s cluster #158

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@ke4 ke4 commented Jul 21, 2023

Changes:

  • Add configuration files for Jenkins CI pipeline

@ke4 ke4 mentioned this pull request Jul 21, 2023
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ke4 and others added 26 commits September 29, 2023 10:00
@ke4
Add volumes for gxa-data and expdesign
f80c92c 
also added scaling for gxa solr cluster
@ke4
configured test execution with the correct solr properties
c57c106
@ke4
Fix experiment file and experiment design file locations
ae248c9
@ke4
Temporarily remove 2 missing experiments
70d44dd
@alfonsomunozpomer
Update atlas-web-core submodule
572a221
@ke4
Change exp design volume to rox
981f40e
@alfonsomunozpomer
Lower pod template resources
461b754
@alfonsomunozpomer
Remove workspace volume
a243da5
@alfonsomunozpomer
Revert workspace volume and use RWO PVC for experiment design
5b03e28
@ke4
Update mockito version to align with the test code usage
3b01b1f
@ke4
Update jacoco test report config
144f28e
@alfonsomunozpomer
Use ROX volume for experiment design files
6733dc3
@alfonsomunozpomer
Increase ephemeral storage
0e1b276
@alfonsomunozpomer
Increase Jenkins agent workspace volume
c163521
@alfonsomunozpomer
Increase memory size of Gradle pod
0c11832
@alfonsomunozpomer
Remove stale imports
5de460d
@alfonsomunozpomer
Use methods from Experiment instead of ExperimentDesign for the heatm…
1541c82 
…ap groupings
@alfonsomunozpomer
Merge remote-tracking branch 'origin/chore/add_ci_env' into chore/add…
5b1b323 
…_ci_env
@alfonsomunozpomer
Update atlas-web-core submodule
97c88a7
@alfonsomunozpomer
Use new experiment design-related logic from the Experiment class
8e05a57
@alfonsomunozpomer
Increase memory request for Gradle pod
cc9500e
@alfonsomunozpomer
Fix compile errors due to missing experiment design in the experiment…
adddc83 
… class
@alfonsomunozpomer
Remove tests and update experiment design-related dependencies
748910e
@alfonsomunozpomer
Fix stubs in test
62ddd68
@alfonsomunozpomer
Remove logging iteration that consumes the iterator (!)
f37052c
@alfonsomunozpomer
Remove stale logger
e6fb583
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