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Running in simulated mode
Rob Campbell edited this page Nov 13, 2019
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You can run BakingTray in a simulated or "dummy" mode for de-bugging. At the command line simply run:
>> BakingTray('dummyMode',true)
That starts BakingTray with simulated components, including a simulated scanner class instead of ScanImage.
>> load BF_172_3_previewStack.mat %loads a 3D stack image: pStack
>> hBT.scanner.attachExistingData(pStack,[8,40]) %8 mics/pix X/Y and 40 in Z
>> hBT.scanner.startFocus % Pan around the sample
Installation: Getting Started
Hardware requirements
Setting up: Overview
Verifying hardware operation
Starting BakingTray
Setting up ScanImage
Settings Files
Achieving high stitching accuracy
Installation: Calibration
Basic calibrating procedures
Calibrating the stages
Fine-tuning positioning accuracy
Further User Instructions
FAQ
Problems & Solutions