This repository contains the code and data supporting our publication "A cortico-subcortical loop for motor control via the pontine reticular formation" in Cell Reports
analysis_code: Contains raw code snippets.data: Contains all .csv and .rds files that the code uses to generate figures.publication_figures: Contains the code for generating figures along with detailed explanations and tests.figure_data: Subdirectory containing Excel datasheets with the figure data.
supplementary_functions: Custom-written functions used for the analysis.useful_to_load: Color matrix for figures. Not utilized; can be ignored.
The publication_figures folder contains the following key files:
electrophysiology_figures.Rmd: Analysis notebook for electrophysiology figures (Fig 3, 4, 5, S2, S3, S4, S6)freely_moving_IL_photoactivation_figures.Rmd: Analysis notebook for freely moving IL photoactivation figures (Fig 6)freely_moving_PnO_photoactivation_figures.Rmd: Analysis notebook for freely moving PnO photoactivation figures (Fig 6, S7)freely_moving_PnO_photoinhibition_figures.Rmd: Analysis notebook for freely moving PnO photoinhibition figures (Fig S8)
This project is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).