Convert between AnnData and SingleCellExperiment
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Updated
Dec 9, 2024 - Python
Convert between AnnData and SingleCellExperiment
Repository containing Jupyter Notebooks for most of the blog posts on my blog. For example, there are data visualization, data manipulation, and data analysis code examples in the Notebooks
Python Channel Attribution (pychattr) - A Python implementation of the excellent R ChannelAttribution library
Running rpy2 in Docker containers
Share Apache Arrow datasets between Python and R.
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
PROFILE RNA-seq binarization technique.
COVID 19 state wise + India + International prediction with data visualization and live curve prediction
Instant Data Report using R packages 'DataExplorer' in Python
Graphical user interface allows easy access to the multiscale model-free idealization methods in the R-package clampSeg (https://cran.r-project.org/package=clampSeg). It supports the model-free segmentation methods JSMURF (https://ieeexplore.ieee.org/document/6655999), JULES (https://ieeexplore.ieee.org/document/8374882) and HILDE (https://arxiv…
This repository contains all codes necessary to reproduce figures and results reported in Stein, Barbosa et al. (Nature Communications, 2020) from the raw data acquired in human behavioral experiments (data included in the repository), and from the relevant model simulations.
Algorithm in python to determine how many people had stroke by age using linear regression
Python and R scripts written to perform some cleaning work on a dataset of Smithsonian Trinomials taken from American Antiquity issues ranging from 2004 to 2013.
NBA Player of the Week Visualizations using ggplot
Use R snippets as python functions. Manage R dependencies separately.
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