image-analysis

Examples illustrating basic stages of analyzing calcium imaging data

Requirements

We will use the TIFFStack class to load image stacks, which can be found on GitHub: https://github.com/DylanMuir/TIFFStack

Contents

• RoiMaker - A simple class that makes a GUI to interactively place elliptical ROIs on an image
• dftregister - Calculates x/y frame translation to remove motion artifacts
• shiftframe - Fast method for applying frame translations
• image_analysis_pipeline - example basic image analysis pipeline