Add conda lockfile export #23
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Nice, a side effect will be that all seqera containers will a new checksum 🙄 Did you try to run the snippet |
Yes I thought the same - not sure how else we can do it though?
Yup, looks good I think! Only did a couple of spot checks though, nothing systematic. $ docker run -it community.wave.seqera.io/library/multiqc:1.24.1--789bc3917c8666da sh
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
# micromamba env export --explicit > environment.lock.yml
# tail environment.lock.yml
https://conda.anaconda.org/conda-forge/noarch/rich-13.7.1-pyhd8ed1ab_0.conda#ba445bf767ae6f0d959ff2b40c20912b
https://conda.anaconda.org/conda-forge/noarch/rich-click-1.8.3-pyhd8ed1ab_0.conda#ad6cdc745c76535e7cc56aab865b1fc5
https://conda.anaconda.org/conda-forge/noarch/spectra-0.0.11-py_1.tar.bz2#3979401f3b9bcebf0adba6d091d390e3
https://conda.anaconda.org/conda-forge/noarch/tqdm-4.66.5-pyhd8ed1ab_0.conda#c6e94fc2b2ec71ea33fe7c7da259acb4
https://conda.anaconda.org/conda-forge/noarch/typeguard-4.3.0-pyhd8ed1ab_1.conda#10f49ee1beb82947170c5a5e1a8c0ef3
https://conda.anaconda.org/bioconda/noarch/multiqc-1.24.1-pyhdfd78af_0.tar.bz2#9d85bb8d72c99ef99bb9806fd879c985
https://conda.anaconda.org/conda-forge/noarch/setuptools-72.2.0-pyhd8ed1ab_0.conda#1462aa8b243aad09ef5d0841c745eb89
https://conda.anaconda.org/conda-forge/noarch/wheel-0.44.0-pyhd8ed1ab_0.conda#d44e3b085abcaef02983c6305b84b584
https://conda.anaconda.org/conda-forge/noarch/pip-24.2-pyhd8ed1ab_0.conda#6721aef6bfe5937abe70181545dd2c51
https://conda.anaconda.org/conda-forge/linux-64/procps-ng-4.0.4-hf303867_0.conda#519103dbe25fa37e0b12a85524c3b323 |
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Just tested using this file locally and it sort of worked but not quite:
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ewels
commented
Sep 10, 2024
wave-utils/src/main/resources/templates/conda/dockerfile-conda-file.txt
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ewels
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Sep 10, 2024
wave-utils/src/test/groovy/io/seqera/wave/util/DockerHelperTest.groovy
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Noticed in seqeralabs/wave#172 (comment) you used |
munishchouhan
changed the base branch from
master
to
add-conda-lock-support
munishchouhan
changed the base branch from
add-conda-lock-support
to
master
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If I add '--name base' to the command |
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I guess we found out why we need the I was testing in complete containers, rather than during the build. So I guess that this is because the command is running before the Should be fine to add |
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Closing in favour of #25 |
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Generate an explicit lockfile for the created environment.
Exposing this will allow people to exactly replicate the conda build on their own systems.
Warning
I haven't tried running anything here, this is just from me testing outside Wave in the docker images. Please confirm that this works as expected in builds.
'cc @munishchouhan