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    83 repositories

    • docs

      Public
      Source code for the Seqera documentation portal.
      MDX
      •3•1•6•9•Updated Nov 1, 2024Nov 1, 2024

    • wave

      Public
      On-demand containers provisioning service
      dockerkubernetesnextflowcontainerssingularity
      Groovy
      •
      GNU Affero General Public License v3.0
      •4•32•47•19•Updated Nov 1, 2024Nov 1, 2024

    • nf-hello-gatk

      Public
      Nextflow
      •
      Other
      •0•0•1•0•Updated Oct 29, 2024Oct 29, 2024

    • wave-k8s-deployment

      Public
      Reference deployment for Wave container provisioner
      Shell
      •0•0•1•1•Updated Oct 23, 2024Oct 23, 2024

    • nf-aggregate

      Public
      Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)
      workflowpipelinenextflowqcseqera
      HTML
      •
      Mozilla Public License 2.0
      •10•7•11•6•Updated Oct 23, 2024Oct 23, 2024

    • seqera-kit

      Public
      Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
      Python
      •
      Apache License 2.0
      •6•25•18•3•Updated Oct 23, 2024Oct 23, 2024

    • wave-cli

      Public
      Command line tool for Wave containers provisioning service
      kubernetescondasingularityspackdockercontainers
      Java
      •
      Apache License 2.0
      •3•12•3•2•Updated Oct 22, 2024Oct 22, 2024

    • nf-stresstest

      Public
      Nextflow
      •0•0•4•2•Updated Oct 17, 2024Oct 17, 2024

    • tower-cli

      Public
      Nextflow Tower CLI tool
      Java
      •
      Apache License 2.0
      •9•42•73•6•Updated Oct 16, 2024Oct 16, 2024

    • homebrew-tap

      Public
      Homebrew Tap of Seqera products and tools
      Ruby
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • libseqera

      Public
      Library for Java & Groovy modules shared across Seqera projects
      Groovy
      •
      Apache License 2.0
      •2•2•0•3•Updated Oct 12, 2024Oct 12, 2024

    • seqera_ai_extension

      Public
      ⏩ Continue is the leading open-source AI code assistant. You can connect any models and any context to build custom autocomplete and chat experiences inside VS Code and JetBrains
      TypeScript
      •
      Apache License 2.0
      •1.6k•0•0•0•Updated Oct 12, 2024Oct 12, 2024

    • nf-schema-testing

      Public
      Dummy pipeline for testing variations of the Nextflow schema
      Nextflow
      •
      MIT License
      •0•1•0•1•Updated Oct 9, 2024Oct 9, 2024

    • nf-raffle

      Public
      This repository contains code for the nf-raffle pipeline by Seqera, used to conduct raffles at events.
      HTML
      •3•1•1•1•Updated Oct 9, 2024Oct 9, 2024

    • tower-agent

      Public
      Agent app that allows connecting remote batch schedulers to Tower Cloud
      nextflow
      Java
      •
      Apache License 2.0
      •4•8•10•0•Updated Sep 25, 2024Sep 25, 2024

    • migtool

      Public
      No-frills DB migration tool
      Groovy
      •
      Mozilla Public License 2.0
      •1•0•4•4•Updated Sep 18, 2024Sep 18, 2024

    • cx-field-tools-installer

      Public
      Unofficial Terraform solution to help clients install Seqera Platform
      HCL
      •
      Apache License 2.0
      •1•3•49•1•Updated Sep 18, 2024Sep 18, 2024

    • nf-canary

      Public
      A minimal Nextflow workflow for testing infrastructure.
      Nextflow
      •
      MIT License
      •3•4•3•1•Updated Sep 17, 2024Sep 17, 2024

    • wave-showcase

      Public
      Examples showing how to configure Nextflow to run with Wave containers provisioning service
      dockernextflowcontainers
      Nextflow
      •5•19•1•0•Updated Sep 17, 2024Sep 17, 2024

    • showcase-automation

      Public
      Python
      •0•0•10•2•Updated Sep 9, 2024Sep 9, 2024

    • terraform-seqera-aws

      Public
      HCL
      •
      Apache License 2.0
      •3•6•5•2•Updated Aug 26, 2024Aug 26, 2024

    • unsafe-tracker

      Public
      JVM agent that track access to off-heap memory via Unsafe class (BETA)
      Java
      •
      Apache License 2.0
      •0•4•0•0•Updated Aug 22, 2024Aug 22, 2024

    • staticreg

      Public
      A tool to generate a static website from an OCI registry containing all the images and tags the provided user has access to.
      Go
      •
      Apache License 2.0
      •0•0•9•0•Updated Aug 19, 2024Aug 19, 2024

    • slurm-simulator

      Public
      Allow simulating Slurm command locally running it in Docker container
      Shell
      •
      Apache License 2.0
      •1•2•0•0•Updated Aug 5, 2024Aug 5, 2024

    • xpack-amzn

      Public
      AWS Xpack for Nextflow
      1•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • conda-recipes

      Public archive
      Conda recipes for the Eel project
      nextflowcondaarm64nf-core
      Shell
      •
      Mozilla Public License 2.0
      •1•3•2•1•Updated Jul 16, 2024Jul 16, 2024

    • nf-tower-aws

      Public
      Repository containing required policies for Nextflow Tower deployment on AWS
      7•7•3•2•Updated Jul 8, 2024Jul 8, 2024

    • showcase

      Public
      Infrastructure as code implementation of the seqeralabs/showcase on Seqera
      Shell
      •
      Mozilla Public License 2.0
      •11•11•0•1•Updated Jul 5, 2024Jul 5, 2024

    • git-readme

      Public
      An opinionated collection of Git one-liners
      1•4•0•0•Updated Jun 12, 2024Jun 12, 2024

    • nf-dragen

      Public
      POC Nextflow pipeline to run Illumina DRAGEN software
      Nextflow
      •
      Mozilla Public License 2.0
      •6•11•0•3•Updated May 29, 2024May 29, 2024