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    32 repositories

    • afids-CNN

      Public
      Automatic localization and identification of salient brain landmarks
      Python
      •
      MIT License
      •3•1•2•1•Updated Oct 23, 2024Oct 23, 2024

    • autoafids_prep

      Public
      Snakemake workflow to prepare data for afids-CNN project
      Python
      •
      MIT License
      •1•0•1•0•Updated Oct 23, 2024Oct 23, 2024

    • afids-macaca

      Public
      anatomical fiducials protocol adapted for macaques
      nhp3d-slicerneuroanatomybrainwebafids
      Jupyter Notebook
      •4•6•5•0•Updated Sep 17, 2024Sep 17, 2024

    • afids-validator

      Public
      Validator for the anatomical fiducial placement protocol
      neuroanatomybrainweb
      Python
      •
      GNU General Public License v3.0
      •4•2•8•9•Updated Jul 15, 2024Jul 15, 2024

    • afids-utils

      Public
      Common utility functions for working with AFIDs data / workflows
      Python
      •
      MIT License
      •3•1•5•0•Updated Mar 15, 2024Mar 15, 2024

    • afids-dbs

      Public
      Data, code, and analysis for characterizing localization and registration errors during DBS using AFIDs
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Mar 5, 2024Mar 5, 2024

    • afids-protocol

      Public
      https://afids.github.io/afids-protocol/
      neuroanatomybrainweb
      HTML
      •
      Other
      •2•1•4•0•Updated Oct 26, 2023Oct 26, 2023

    • afids-data

      Public
      manual curated brain anatomical landmark data on common neuroimaging datasets
      HTML
      •
      Other
      •0•2•0•0•Updated Jun 22, 2023Jun 22, 2023

    • AFIDs-HCP

      Public
      HCP Unrelated 100 Subset (AFIDs-HCP)
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jun 22, 2023Jun 22, 2023

    • afids-regRF

      Public
      automatic localization of anatomical landmarks using random forest regression
      Jupyter Notebook
      •
      MIT License
      •1•0•2•0•Updated Jun 15, 2023Jun 15, 2023

    • tpl-fsaverage

      Public
      Other
      •0•0•0•0•Updated May 4, 2023May 4, 2023

    • tpl-MNI152NLin6Asym

      Public
      FSL's modified version (Asymmetric) of the MNI ICBM 152 non-linear 6th Generation Symmetric Average Brain Stereotaxic Registration Model
      Other
      •4•0•0•0•Updated May 4, 2023May 4, 2023

    • tpl-OASIS30ANTs

      Public
      OASIS template, created by ANTs Consortium (@ANTsX) for MICCAI
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated May 4, 2023May 4, 2023

    • afids-auto

      Public
      automatic anatomical fiducial placement
      Python
      •1•0•4•0•Updated Mar 28, 2023Mar 28, 2023

    • AFIDs-OASIS

      Public
      Anatomical landmark data curated on a subset of the Open Access Series of Imaging Studies-1 (AFIDs-OASIS)
      0•0•0•0•Updated Feb 14, 2023Feb 14, 2023

    • tpl-MNI305

      Public
      Other
      •1•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • tpl-MNI152NLin6Sym

      Public
      Symmetric MNI152 6th generation template
      Other
      •1•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • tpl-MNI152NLin2009cSym

      Public
      Other
      •1•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • tpl-MNI152NLin2009cAsym

      Public
      MNI152NLin2009cAsym
      Other
      •8•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • tpl-MNI152NLin2009bSym

      Public
      Other
      •1•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • tpl-MNI152NLin2009bAsym

      Public
      Other
      •1•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • tpl-MNI152Lin

      Public
      Other
      •3•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • tpl-MNIColin27

      Public
      Other
      •0•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • afids-protocol-old

      Public
      neuroanatomy3dslicerafids
      CSS
      •
      Apache License 2.0
      •0•2•0•5•Updated Dec 5, 2022Dec 5, 2022

    • afids-education

      Public
      This repository will host training modules for placement of the anatomical fiducial protocol
      MIT License
      •0•0•0•0•Updated Dec 1, 2022Dec 1, 2022

    • afids-clinical

      Public
      HTML
      •
      MIT License
      •1•0•0•0•Updated Sep 27, 2021Sep 27, 2021

    • afids-macaca-ohbm2021

      Public
      AFIDs: a standardized framework for evaluating anatomical correspondence between primate brains (Poster OHBM 2021)
      HTML
      •1•0•0•0•Updated Jun 23, 2021Jun 23, 2021

    • afids-hbm2019-cover

      Public
      inkscape files for HBM2019 cover
      0•0•0•0•Updated May 7, 2020May 7, 2020

    • afids-protocol-original

      Public
      anatomical fiducial placement protocol
      neuroanatomyafids3d-slicer
      MIT License
      •2•1•0•1•Updated Apr 14, 2020Apr 14, 2020

    • afids-analysis

      Public
      analysis for the anatomical fiducials manuscript
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Apr 14, 2020Apr 14, 2020