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    49 repositories

    • crabs-exploration

      Public
      A toolkit for detecting and tracking crabs in the field.
      computer-visionobject-detectionneuroinformaticscomputer-vision-toolsanimal-behaviourcrabsvideo-processing-pipeline
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•7•53•12•Updated Oct 31, 2024Oct 31, 2024

    • aeon_feeder_v2

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • microharp

      Public
      A Harp protocol and device application framework micropython package.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•1•Updated Oct 31, 2024Oct 31, 2024

    • neuroPico

      Public
      MicroPython Library for NeuroPico
      Python
      •
      Other
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • NeuralPlayground

      Public
      The standardised environment for the hippocampus and entorhinal cortex models
      Python
      •
      MIT License
      •6•63•10•3•Updated Oct 30, 2024Oct 30, 2024

    • rc2_analysis_videos

      Public
      Matlab scripts to analyse behavioural data using the cameras as data source.
      MATLAB
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • rc2_analysis

      Public
      MATLAB
      •0•1•0•0•Updated Oct 28, 2024Oct 28, 2024

    • aeon_analysis

      Public
      Data Analysis code for Project Aeon
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Oct 28, 2024Oct 28, 2024

    • aeon_acquisition

      Public
      Task control and acquisition systems for Project Aeon.
      C#
      •
      BSD 3-Clause "New" or "Revised" License
      •3•4•7•3•Updated Oct 24, 2024Oct 24, 2024

    • aeon_schema

      Public
      A library that defines Project Aeon reusable JSON data schemas
      0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • aeon_experiments

      Public
      Experiment workflows for Project Aeon
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•91•2•Updated Oct 23, 2024Oct 23, 2024

    • sjbpod

      Public
      MATLAB
      •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • rc2_matlab

      Public
      MATLAB
      •0•2•0•0•Updated Oct 18, 2024Oct 18, 2024

    • aeon_mecha

      Public
      Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
      python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•5•66•5•Updated Oct 11, 2024Oct 11, 2024

    • aeon_docs

      Public
      Online docs repo for Project Aeon.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•21•3•Updated Oct 5, 2024Oct 5, 2024

    • FNT_timestamp_alignment

      Public
      Pipeline for aligning harp and ephys timestamps to a single master clock.
      Jupyter Notebook
      •0•2•3•0•Updated Sep 12, 2024Sep 12, 2024

    • FNT_behavior_analysis

      Public
      Pipeline for giving an overview of behavioural data from mice in the flexible navigation task.
      MATLAB
      •0•1•0•0•Updated Sep 10, 2024Sep 10, 2024

    • aeon_feeder_fix

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Aug 20, 2024Aug 20, 2024

    • glmhmm

      Public
      code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs). Fork for FlexiVexi
      Jupyter Notebook
      •15•1•0•0•Updated Aug 14, 2024Aug 14, 2024

    • swc-computing

      Public
      Community driven guides to solving computational problems at SWC/GCNU
      Creative Commons Zero v1.0 Universal
      •0•2•0•0•Updated Jul 29, 2024Jul 29, 2024

    • aeon_lineardrive

      Public
      A linear stage controller for moving the position of a commutator
      C#
      •1•0•0•0•Updated Apr 3, 2024Apr 3, 2024

    • aeon_feeder

      Public
      C
      •
      Other
      •1•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • OpenSerialSection

      Public
      Open Serial Section Imaging @ SWC
      SCSS
      •
      MIT License
      •26k•0•0•0•Updated Mar 5, 2024Mar 5, 2024

    • WAZP

      Public
      Wasp Animal-tracking Zoo project with Pose estimation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•36•8•Updated Feb 2, 2024Feb 2, 2024

    • pmt_controller

      Public
      Python
      •1•0•0•0•Updated Nov 22, 2023Nov 22, 2023

    • aeon_blog

      Public
      Project Aeon's "meta" repo that details the project, with a focus on dev practices and notes on technology review, challenges and insights.
      Shell
      •0•2•2•0•Updated Nov 2, 2023Nov 2, 2023

    • software-skills

      Public archive
      Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
      HTML
      •
      Creative Commons Attribution 4.0 International
      •3•2•0•0•Updated Mar 9, 2023Mar 9, 2023

    • Pyper

      Public
      Motion Tracking
      pythonbehavioropencvmotion-detectionneuroscience
      Python
      •10•13•7•1•Updated Jan 12, 2023Jan 12, 2023

    • lasagna

      Public
      3-D imaging visualisation through slicing
      neuroscienceregistrationanatomypythonpyqtgraph
      Python
      •
      GNU General Public License v3.0
      •7•28•103•0•Updated Dec 23, 2022Dec 23, 2022

    • socket-feeder

      Public
      Wireless feeder controller
      Python
      •1•0•0•0•Updated Dec 12, 2022Dec 12, 2022