GitHub - open-ephys/simpleclust: Manual spike clustering software for matlab

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 153 Commits
InPolygon-MEX		InPolygon-MEX
read_cheetah		read_cheetah
read_open_ephys		read_open_ephys
rls		rls
.gitignore		.gitignore
README		README
create_simpleclust_test.m		create_simpleclust_test.m
example_data_simpleclust.mat		example_data_simpleclust.mat
extract_spikes_from_raw.m		extract_spikes_from_raw.m
license.txt		license.txt
manual.png		manual.png
sc_acorr.m		sc_acorr.m
sc_add_isi_feature.m		sc_add_isi_feature.m
sc_add_to_cluster.m		sc_add_to_cluster.m
sc_add_to_cluster_from_any.m		sc_add_to_cluster_from_any.m
sc_addnoisetoquantiledfeatures.m		sc_addnoisetoquantiledfeatures.m
sc_addotherchannelstomua.m		sc_addotherchannelstomua.m
sc_compare_features.m		sc_compare_features.m
sc_compute_extra_PCA_coeffs.m		sc_compute_extra_PCA_coeffs.m
sc_compute_extra_PCA_coeffs_aligned.m		sc_compute_extra_PCA_coeffs_aligned.m
sc_compute_extra_PCA_coeffs_partial.m		sc_compute_extra_PCA_coeffs_partial.m
sc_compute_extra_wavelet_coeffs.m		sc_compute_extra_wavelet_coeffs.m
sc_extramenu.m		sc_extramenu.m
sc_getpolygon.m		sc_getpolygon.m
sc_ginput.m		sc_ginput.m
sc_intersect_cluster.m		sc_intersect_cluster.m
sc_load_mua_dialog.m		sc_load_mua_dialog.m
sc_loadmuadata.m		sc_loadmuadata.m
sc_mua2features.m		sc_mua2features.m
sc_parse_clickonwaveforms.m		sc_parse_clickonwaveforms.m
sc_parse_custerselection.m		sc_parse_custerselection.m
sc_parse_feature_selection.m		sc_parse_feature_selection.m
sc_parse_highlight_wave.m		sc_parse_highlight_wave.m
sc_parse_zoom.m		sc_parse_zoom.m
sc_plot_cluster_info.m		sc_plot_cluster_info.m
sc_plotallclusters.m		sc_plotallclusters.m
sc_plotclusters.m		sc_plotclusters.m
sc_plotclusterselection.m		sc_plotclusterselection.m
sc_plotextramenu.m		sc_plotextramenu.m
sc_plotfeatureselection.m		sc_plotfeatureselection.m
sc_plotinbox.m		sc_plotinbox.m
sc_plotshaded.m		sc_plotshaded.m
sc_remap.m		sc_remap.m
sc_remove_from_cluster.m		sc_remove_from_cluster.m
sc_save_dialog.m		sc_save_dialog.m
sc_scale_features.m		sc_scale_features.m
sc_sxcorr.m		sc_sxcorr.m
sc_timeline.m		sc_timeline.m
sc_title_waveform.m		sc_title_waveform.m
sc_updateclusterimages.m		sc_updateclusterimages.m
sc_wave_features_wc_mod_8.m		sc_wave_features_wc_mod_8.m
sc_zoom_all.m		sc_zoom_all.m
simple_clust.m		simple_clust.m
simple_clust.zip		simple_clust.zip
simpleclust.m		simpleclust.m
test_ks.m		test_ks.m

Repository files navigation

Simple Clust v0.5

jan 2013, Jakob Voigts ([email protected])



Disclaimer: I wrote this software for my own use, and little time was spent testing it in different scenarios, or in making the code pretty. 
Simpleclust is released under the GNU GPL.

Get the lastest version of simple clust on github:
https://github.com/moorelab/simpleclust

Or download the latest release as zip archive:
https://github.com/moorelab/simpleclust/archive/master.zip


Manual:
run simple_clust.m in matlab to start.
See manual.png for a (slightly outdated) function overview.

Also, check my website at www.mit.edu/~jvoigts for posts that explain features of simpleclust 

See the header of simple_clust.m for a feature list and some more info.