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niksirbi authored May 21, 2022
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**Author:** [Nikoloz Sirmpilatze](https://github.com/niksirbi) ([German Primate Center](https://www.dpz.eu/))

**Citing pcarpet:** If you use `pcarpet` in a scientific publication, please cite the following manuscript preprint:
**Citing pcarpet:** If you use `pcarpet` in a scientific publication, please cite the following manuscript:

Sirmpilatze N, Mylius J, Ortiz-Rios M, Baudewig J, Paasonen J, Golkowski D, Ranft A, Ilg R, Gröhn O, Boretius S. 2021. *Spatial signatures of anesthesia-induced burst-suppression differ between primates and rodents.* bioRxiv. doi:10.1101/2021.10.15.464515
Sirmpilatze N, Mylius J, Ortiz-Rios M, Baudewig J, Paasonen J, Golkowski D, Ranft A, Ilg R, Gröhn O, Boretius S. *Spatial signatures of anesthesia-induced burst-suppression differ between primates and rodents.* eLife 2022;11:e74813. DOI: https://doi.org/10.7554/eLife.74813


**Links:**

1. [Documentation](https://pcarpet.readthedocs.io/en/latest/)
2. [Preprint on bioRxiv](https://www.biorxiv.org/content/10.1101/2021.10.15.464515)
2. [Manuscript](https://doi.org/10.7554/eLife.74813)


**Overview:**
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([Aquino et al., 2020](https://www.sciencedirect.com/science/article/pii/S1053811920301014)),
which often come from non-neural sources (e.g. head motion).

That said, the carpet plot can also reveal 'real' neural activity, especially when the activity is slow and synchronous, as is the case for **anesthesia-induced burst-suppression** ([Sirmpiltze et al., 2021](https://www.biorxiv.org/content/10.1101/2021.10.15.464515)).
The `pcarpet` package implements the analytical pipeline used in the [Sirmpiltze et al., 2021](https://www.biorxiv.org/content/10.1101/2021.10.15.464515) paper to identify instances of burst-suppression in anesthetized humans, nonhuman primates, and rats.
That said, the carpet plot can also reveal 'real' neural activity, especially when the activity is slow and synchronous, as is the case for **anesthesia-induced burst-suppression** ([Sirmpiltze et al., 2022](https://doi.org/10.7554/eLife.74813)).
The `pcarpet` package implements the analytical pipeline used in the [Sirmpiltze et al., 2022](https://doi.org/10.7554/eLife.74813) paper to identify instances of burst-suppression in anesthetized humans, nonhuman primates, and rats.

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## How it works
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