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Is your feature request related to a problem? Please describe.
The centre of rotation is not aligned with the centre of the image. It becomes very clear when doing np.max(original_video, axis=0)
Describe the solution you'd like
I want a method to be added in the pipeline that finds this centre.
Describe alternatives you've considered
I think there are two options:
A) Fit an ellipse to the image:
- take the max projection (np.max())
- set a threshold and get binary image
- fit ellipse (with scikit-image)
B) Use the two most bright cells, find their contours, and use geometry
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe.
The centre of rotation is not aligned with the centre of the image. It becomes very clear when doing
np.max(original_video, axis=0)
Describe the solution you'd like
I want a method to be added in the pipeline that finds this centre.
Describe alternatives you've considered
I think there are two options:
A) Fit an ellipse to the image:
- take the max projection (
np.max()
)- set a threshold and get binary image
- fit ellipse (with
scikit-image
)B) Use the two most bright cells, find their contours, and use geometry
The text was updated successfully, but these errors were encountered: