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Add allen institute vendored code + Neuropil subtraction exploration #21

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Description

What is this PR

  • Bug fix
  • Addition of a new feature
  • Other

Why is this PR needed?

  1. Eliminate dependency from Allen SDK
  2. Neuropil subtraction is not fully explored

What does this PR do?

  1. Vendors two Allen SDK modules
  2. TODO: Adds a few functions for neuropil subtraction and compares them

References

Resolves #17

How has this PR been tested?

TODO

Is this a breaking change?

No

Does this PR require an update to the documentation?

Should... TODO

Checklist:

  • The code has been tested locally
  • Tests have been added to cover all new functionality
  • The documentation has been updated to reflect any changes
  • The code has been formatted with pre-commit

@lauraporta lauraporta force-pushed the feature/neuropil-subtraction branch from e066ee6 to 2d0f8ec Compare July 26, 2024 13:40
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Successfully merging this pull request may close these issues.

Test sensitivity of different neuropil subtraction methods to artifacts
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