Merge pull request #36 from mxochicale/35-feb2024

35 - feb2024 update

.github/workflows/cv-two-pages.yml

@@ -19,6 +19,7 @@ on:
       - 30-july2023
       - 30-20thjuly2023
       - 33-sep2023
+      - 35-feb2024
 
 jobs:
   build:

.gitignore

@@ -23,6 +23,7 @@
 **/*.run.xml
 **/tex/main.pdf
 **/tex/cv-two-pages.pdf
+**input.pdf
 
 ##/png images
-**/output-*.png
+**/output-*.png

README.md

@@ -1,9 +1,14 @@
-# :scroll: My Curriculum Vitae (updated on 24th of September 2023)
+# :scroll: My Curriculum Vitae (11th February 2024)
+
 [![GitHub Actions Status](https://github.com/mxochicale/cv/workflows/CICV2P/badge.svg)](https://github.com/mxochicale/cv/actions) [![CV](https://img.shields.io/badge/read_my-CV-blue.svg)](https://github.com/mxochicale/cv/blob/generated-pdfs/cv-two-pages.pdf)
 
-My CV is written in LaTeX and it is built locally in Ubuntu 22.04x64 OS with [texlive](https://github.com/mxochicale/latex/tree/master/installation) and remotely with [github action CI](https://github.com/free-cortex/framework/tree/main/workflow). 
+My Curriculum Vitae (CV) is written in LaTeX and it is built locally in Ubuntu 22.04x64 OS with [texlive](https://github.com/mxochicale/latex/tree/master/installation) and remotely with [github action CI](https://github.com/free-cortex/framework/tree/main/workflow). 
 Refer to [README](tex/README.md) for detailed instructions on local and remote latex built. 
 
+[<img src="docs/page-0.png" width="400">](https://github.com/mxochicale/cv/blob/generated-pdfs/cv-two-pages.pdf)
+[<img src="docs/page-1.png" width="400">](https://github.com/mxochicale/cv/blob/generated-pdfs/cv-two-pages.pdf)
+
+
 ## Clone repository
 After generating your SSH keys as suggested [here](https://docs.github.com/en/github/authenticating-to-github/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent) or [here](https://github.com/mxochicale/tools/blob/main/github/SSH.md).
 You can then clone the repository by typing (or copying) the following line in a terminal at your selected path in your machine:
@@ -28,5 +33,7 @@ Hence, you are free to reuse it and modify it as much as you want and as long as
 * [How to write a LaTeX class file and design your own CV](https://www.overleaf.com/learn/latex/How_to_write_a_LaTeX_class_file_and_design_your_own_CV_(Part_1))
 
 ## Contact and issue report
-If you have specific questions about the content of this repository, you can contact [Miguel Xochicale](mailto:[email protected]?subject="[cv]").    
-If your question might be relevant to other people, please instead [open an issue](https://github.com/mxochicale/cv/issues).
+
+Happy to touch base, just drop me an [e-mail](mailto:[email protected]?subject="[cv]").
+If you have questions or issues relavant to this repo, please instead [open an issue](https://github.com/mxochicale/cv/issues).
+

docs/pdf2png.bash

@@ -7,8 +7,12 @@
 
 
 wget https://github.com/mxochicale/cv/raw/generated-pdfs/cv-two-pages.pdf
+#cp ../tex/cv-two-pages.pdf .
+
 mv cv-two-pages.pdf input.pdf
-convert -background white -alpha remove -alpha off -density 500 input.pdf -quality 300 output.png
+DENSITY=100 #500
+QUALITY=500 #300
+convert -background white -alpha remove -alpha off -density ${DENSITY} input.pdf -quality ${QUALITY} page.png
 rm *.pdf
 #ALTERNATIVES
 #convert cv-two-pages.pdf cv-two-pages.png

tex/cv-two-pages.tex

@@ -6,7 +6,7 @@
 }
 
 \address{
-Research Engineer, advancing AI-based Surgical Navigation tools\\
+Research Engineer, advancing real-time AI-enabled Surgical tools\\
 Advanced Research Computing Centre and WEISS \\
 University College London, UK
 }
@@ -64,9 +64,9 @@ \subsection{M.Sc. in Signal Processing at Institute of Astrophysics, Optics and
 \section{Research Experience}
 \subsection{Research Engineer at University College London, UK}[Oct 2022~--~Present]
 \begin{itemize}
-  \item Collaborators: \href{https://scholar.google.co.uk/citations?user=-rD4cJIAAAAJ}{Stephen Thompson},  \href{https://iris.ucl.ac.uk/iris/browse/profile?upi=TMDOW59}{Dr Thomas Dowrick} and \href{https://iris.ucl.ac.uk/iris/browse/profile?upi=MJCLA42}{Prof Matt Clarkson}
+  \item Collaborators: \href{https://scholar.google.co.uk/citations?user=-rD4cJIAAAAJ}{Stephen Thompson} and \href{https://iris.ucl.ac.uk/iris/browse/profile?upi=MJCLA42}{Prof Matt Clarkson}
   \item 
-I am advancing AI-based Surgical Navigation tools with Python and CUDA programming languages via GitHub.
+I am advancing AI-enabled Surgical Navigation tools via GitHub.
 %Additionally, I am leading the preparation of one proceeding and one manuscript in the area of medical imaging with real-time deep learning techniques.
 %All previous activities in collaboration with renowned clinicians and engineers in KCL, University of Oxford and University of Melbourne. 
 See more at \href{https://github.com/SciKit-Surgery}{(\faExternalLink*)}.
@@ -161,17 +161,20 @@ \section{Supervision and Teaching Experience}
 
 \subsection{University College London}[Jan 2023~--~Present]
 \begin{itemize}
-	\item Teaching Associate: AI in Healthcare Group project. Lecturer: Prof. Paul Taylor \printdate{Jan 23'~--~March 23'}
-	\\ I led two group projects on \textit{Fetal Brain Ultrasound Imaging synthesis with Diffusion Models.}
+	\item Supervision: Sujon Hekim, in2reserach summer placement
+			\textit{Project: AI-based surgical skill assessment using transformer model.}
+		\printdate{June 23'~--~Sep 23'}
+
 	\item Supervision: Xiaoning Zhu, M.Sc in Health Data Science
 		\textit{Project: Automatic Medical Image Reporting with transformer-based models.}
 		\printdate{Jan 23'~--~Aug 23'}
 	\item Supervision: Qingyu Yang, M.Sc. in Health Data Science
 		\textit{Project: Fetal Brain Ultrasound Imaging synthesis with diffusion models.}
 		\printdate{May 23'~--~Aug 23'}
-	\item Supervison: Sujon Hekim, in2reserach summer placement
-			\textit{Project: AI-based surgical skill assessment using transformer model.}
-		\printdate{June 23'~--~Aug 23'}
+
+	\item Teaching Associate: AI in Healthcare Group project. Lecturer: Prof. Paul Taylor \printdate{Jan 23'~--~March 23'}
+	\\ I led two group projects on \textit{Fetal Brain Ultrasound Imaging Synthesis with Diffusion Models.}
+
 \end{itemize}
 
 \subsection{King's College London}[Jan 2020~--~September 2022]
@@ -315,6 +318,9 @@ \subsection{The University of Birmingham}[Jun 2018~--~ Dec 2018]
 \section{Grants, Awards and Honours}
 \begin{itemize}
 
+\item UCL Open Science award 2023 for organising "Open-Source Software for SurgTech" workshop \href{https://blogs.ucl.ac.uk/open-access/2023/10/26/open-science-scholarship-awards-winners/}{\faExternalLink*}, \href{https://github.com/oss-for-surgtech}{\faGithub*}
+\printdate{(26/10/2023)}.
+
 \item My M.Sc. student, Thea Bautista received the Maurice Wilkins Prize at KCL for the best MEng Individual Research Project in 2022 \href{https://twitter.com/_mxochicale/status/1564571097932402688}{\faExternalLink*} \printdate{(30/08/2022)}.
 
 \item King's Public Engagement grant for the project "FETUS: Finding a fETus with an Ultrasound Simulator" led by myself and in collaboration with Fang-Yu Lin and Shu Wang \href{https://cai4cai.ml/post/2021-01-07-miguelpegrant/}{\faExternalLink*} \printdate{(07/01/2021 - 07/01/2022)}
@@ -332,9 +338,11 @@ \section{Grants, Awards and Honours}
 
 \item My project of a low-cost robot was selected among 125 applications received from 35 countries and presented at the 1st international public entrepreneurship program in Mexico (MECATE 2015). \href{http://let-emprendimientopublico.mx/en/portfolio_category/mecate-primera-generacion-en/}{\faExternalLink*} \href{https://www.youtube.com/watch?v=VjVGnwD422g}{\faYoutube} \printdate{20-24/07/2015}
 
-\item I won a Ph.D. scholarship by the Mexican National Council on Science and Technology and University of Birmingham. \printdate{11/2014-11/2018}
+\item I was awarded with a Ph.D. scholarship by the Mexican National Council on Science and Technology and the University of Birmingham. \printdate{11/2014-11/2018}
+
+\item 
 
-\item Markovito's team won the first place at the Mexican Tournament of Robotics 2013 in the category at HOME, presenting a Human-Robot Interaction Dance Demo. \href{https://www.youtube.com/watch?v=Kw-lZam_qZI}{\faYoutube} \printdate{25-27/05/2013}
+Markovito's team was awarded the first place of HOME category at the Mexican Tournament of Robotics 2013, presenting a Human-Robot Interaction Dance Demo \href{https://www.youtube.com/watch?v=Kw-lZam_qZI}{\faYoutube} \printdate{25-27/05/2013}
 
 %\item I won a M.Sc. scholarship by the Mexican National Council on Science and Technology. \printdate{09/2004-09/2006}
 \end{itemize}
@@ -371,7 +379,7 @@ \section{Skills}
 Video framegrabbers (PCI \& usb from ephipan), \& 
 Clinical Ultrasound Devices (Voluson E10, Philips EPIC, convex \& linear probes), 
 Medical imaging (3D slicer, ITK-SNAP), \& 
-NVIDIA Clara AGX
+NVIDIA Clara AGX with holoscan-sdk [2023-present].
 
 \item[QMS] 
 Control documents with standard compliances using:
@@ -395,17 +403,20 @@ \section{Outreach activities and scientific engagement}
 %  \entry{Outreach activities and scientific engagement}{Sep 2019~--~Present}
 %\end{positions}
 \begin{itemize}
-\item Lead organiser of "Open-Source Software for Surgical Technologies" at the Hamlym Symposium on Medical Robotics 2023
+\item Lead organiser of "Open-Source Software for SurgTech" at the Hamlym Symp. on Medical Robotics 2023
 	\href{https://www.hamlynsymposium.org/events/open-source-software-for-surgical-technologies/}{\faExternalLink*}, 
 	Video Playlist \href{https://youtube.com/playlist?list=PLtGJkyfu0klZlvZkPyDLArhjs7i39C-ld&si=wmOQZ2Qr5_QDWrg3}{\faYoutube} \& 
 	GitHub: \href{https://github.com/oss-for-surgtech/workshop-hamlyn2023}{\faGithub*} 
 	\printdate{Jan 23' -- Oct 23'}.
-\item Co-organised of journal club for computer vision and deep learning at Advanced Research Computing Centre 
-	\printdate{01-01-2023 -- present}.
-\item Co-organised of activities for SciKit-Surgery tools for the CMICHACKS hackathon: 
+
+\item Lead organiser of CMICHACKS hackathon "Real-time AI for surgery": 
 	\href{https://cmic-ucl.github.io/CMICHACKS//}{\faExternalLink*}. 
 	\printdate{10/11-11-2022}.
-\item Co-organised of events at the Early Career Researcher Network at the BMEIS (monthly meetings \& writing workshops). 
+
+\item Co-organised of journal club for computer vision and deep learning at Advanced Research Computing Centre 
+	\printdate{01-01-2023 -- 01-06-2023}.
+
+\item Co-organised of events at the BMEIS Early Career Researcher Network (monthly meetings \& writing workshops). 
 	\printdate{01-01-2021 - 01-09-2022}.
 \item Participation in the Westminster Enterprise Week to engage students aged 14-18 to Biomedical Engineering. 
 	\printdate{10-11-2021}

tex/mycv.cls

@@ -97,8 +97,8 @@
 % Custom styles
 \RequirePackage{titlesec}
 %\titleformat{\section}[leftmargin]{\large\scshape\sffamily}{}{0cm}{}
-\titleformat{\section}{\LARGE\scshape\bf}{}{-2.5mm}{}
-\titlespacing{\section}{\dimexpr\Gm@lmargin-\Gm@rmargin-0.0cm\relax}{1\parskip}{0.1cm}
+\titleformat{\section}{\Large\scshape\bf}{}{-2.5mm}{}
+\titlespacing{\section}{\dimexpr\Gm@lmargin-\Gm@rmargin-0.0cm\relax}{1\parskip}{0.075cm}
 
 % \subsection{title}
 % \subsection{title}[location]

tex/publications.bib

@@ -1,3 +1,42 @@
+
+@article{thompson2023using,
+  title={Using SciKit-Surgery for Augmented Reality in Surgery Research},
+  author={Thompson, Stephen and 
+            Xochicale, Miguel and 
+            Dowrick, Thomas and 
+            Clarkson, Matthew},
+  author+an = {2=highlight},
+  year={2023},
+  month={June},
+  day={14},
+  journal = {Hamlyn Symposium of Medical Robotics},
+}
+
+
+
+@Article{Nhat2023,
+author={
+Nhat, Phung Tran Huy and Van Hao, Nguyen and Tho, Phan Vinh and Kerdegari, Hamideh and Pisani, Luigi and Thu, Le Ngoc Minh and Phuong, Le Thanh and Duong, Ha Thi Hai and Thuy, Duong Bich and McBride, Angela and Xochicale, Miguel and Schultz, Marcus J. and Razavi, Reza and King, Andrew P.
+and Thwaites, Louise and Van Vinh Chau, Nguyen and Yacoub, Sophie and Thao, Dang Phuong and Kien, Dang Trung and Thy, Doan Bui Xuan and Trinh, Dong Huu Khanh and Duc, Du Hong and Geskus, Ronald and Hai, Ho Bich and Chanh, Ho Quang and Van Hien, Ho and Trieu, Huynh Trung and Kestelyn, Evelyne and Yen, Lam Minh and Van Khoa, Le Dinh and Khanh, Le Thuy Thuy and Tran, Luu Hoai Bao and An, Luu Phuoc and Vuong, Nguyen Lam and Huy, Nguyen Quang and Quyen, Nguyen Than Ha and Ngoc, Nguyen Thanh and Giang, Nguyen Thi and Trinh, Nguyen Thi Diem and Le Thanh, Nguyen Thi and Dung, Nguyen Thi Phuong and Thao, Nguyen Thi Phuong and Van, Ninh Thi Thanh and Kieu, Pham Tieu and Khanh, Phan Nguyen Quoc and Lam, Phung Khanh
+and Thwaites, Guy and Duc, Tran Minh and Hung, Trinh Manh and Turner, Hugo and Van Nuil, Jennifer Ilo and Hoang, Vo Tan and Huyen, Vu Ngo Thanh and Tam, Cao Thi and Nghia, Ho Dang Trung and Chau, Le Buu and Toan, Le Mau and Thao, Le Thi Mai and Tai, Luong Thi Hue and Phu, Nguyen Hoan and Viet, Nguyen Quoc and Dung, Nguyen Thanh and Nguyen, Nguyen Thanh and Phong, Nguyen Thanh and Anh, Nguyen Thi Kim and Van Thanh Duoc, Nguyen and Oanh, Pham Kieu Nguyet and Van, Phan Thi Hong and Qui, Phan Tu and Thao, Truong Thi Phuong and Ali, Natasha and Clifton, David and English, Mike and Hagenah, Jannis and Lu, Ping and McKnight, Jacob and Paton, Chris and Zhu, Tingting and Georgiou, Pantelis and Perez, Bernard Hernandez and Hill-Cawthorne, Kerri and Holmes, Alison and Karolcik, Stefan and Ming, Damien and Moser, Nicolas and Manzano, Jesus Rodriguez and Canas, Liane and Gomez, Alberto and King, Andrew and Modat, Marc and Karlen, Walter and Denehy, Linda and Rollinson, Thomas and Schultz, Marcus and Consortium, V. I. T. A. L.},
+author+an = {11=highlight},
+title={Clinical benefit of AI-assisted lung ultrasound in a resource-limited intensive care unit},
+journal={Critical Care},
+year={2023},
+month={Jul},
+day={01},
+volume={27},
+number={1},
+pages={257},
+abstract={Interpreting point-of-care lung ultrasound (LUS) images from intensive care unit (ICU) patients can be challenging, especially in low- and middle- income countries (LMICs) where there is limited training available. Despite recent advances in the use of Artificial Intelligence (AI) to automate many ultrasound imaging analysis tasks, no AI-enabled LUS solutions have been proven to be clinically useful in ICUs, and specifically in LMICs. Therefore, we developed an AI solution that assists LUS practitioners and assessed its usefulness in  a low resource ICU.},
+issn={1364-8535},
+doi={10.1186/s13054-023-04548-w},
+url={https://doi.org/10.1186/s13054-023-04548-w}
+}
+
+
+
+
 %@misc{xochicale2023-oosfsg,
   author = {
 	Dowrick, Thomas and