This repository contains code for a simulation of a presynaptic terminal, where we model a Calcium microdomain using a simple multi-compartment model based off the Hodgkin-Huxley equations.
Get this repo from within MATLAB using my package manager:
% copy and paste this code in your MATLAB prompt
urlwrite('http://srinivas.gs/install.m','install.m');
install sg-s/srinivas.gs_mtools % you'll need this
install sg-s/puppeteer % for manipulation
install sg-s/xolotl % C++ code for simulation
install marderlab/eag % this repository
or use git if you plan to develop this further:
git clone https://github.com/sg-s/srinivas.gs_mtools
git clone https://github.com/sg-s/puppeteer
git clone https://github.com/sg-s/xolotl
git clone https://github.com/marderlab/eag
Finally, make sure you configure MATLAB so that it is set up to delete files permanently. Otherwise you will end up with a very large number of temporary files in your trash!
Reproduce the modelling figure by running
paper_figuresin your MATLAB prompt.
This software is free software. GPL v3.