Skip to content
View lskatz's full-sized avatar
💭
coding, coding, coding
💭
coding, coding, coding
194 followers · 86 following

Achievements

Achievement: Pair Extraordinairex4Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex4Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@ncezid-biome

Block or report lskatz

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
lskatz/README.md

Hi there 👋

I am a bioinformatician in the Enteric Diseases Laboratory Branch at CDC. My repos include those for work and those for outside of work.

  • I speak 🐫 perl, ⚙️ rust, and 🐬 SQL
  • I pretend to speak 🙄 R and 🐍 Python.
  • 😵 In my past lives, I used to code PHP, HTML, CSS, JavaScript, and even some C.

I have worked on some perl modules including Bio::Kmer but also more complete packages such as Mashtree and Lyve-SET. I have more in my repos and would be glad to collaborate with you!

For more information

Pinned Loading

  1. mashtree mashtree Public

    🌳 Create a tree using Mash distances

    Perl 155 24

  2. lyve-SET lyve-SET Public

    💃 🌴 LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations

    Perl 25 18

  3. SneakerNet SneakerNet Public

    🐾 QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run

    Perl 11 4

  4. fasten fasten Public

    👷 Fasten toolkit, for streaming operations on fastq files

    Rust 76 6

  5. Kalamari Kalamari Public

    🐙 A curated database of completed assemblies with taxonomy IDs

    Perl 39 3

  6. tongzhouxu/mashpit tongzhouxu/mashpit Public

    📝 Sketch-based surveillance platform

    Python 9 3