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Simulations for ChIN-LTS network with extrinsic cortical and thalamic input - with nitric oxide and muscarinic modulation

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4 Commits
Experimental-data
Experimental-data
 
 
Output
Output
 
 
Synapses
Synapses
 
 
config
config
 
 
mechanisms
mechanisms
 
 
model_version
model_version
 
 
Acetyl20Hz.csv
Acetyl20Hz.csv
 
 
AchE_plotting.py
AchE_plotting.py
 
 
Figure4-NO-config-new-model.py
Figure4-NO-config-new-model.py
 
 
Figure5-M4-config-new-model.py
Figure5-M4-config-new-model.py
 
 
Figure6-cortical-synapse-ChIN-config.py
Figure6-cortical-synapse-ChIN-config.py
 
 
Figure6-cortical-synapse-ChIN-spiking-config.py
Figure6-cortical-synapse-ChIN-spiking-config.py
 
 
Figure6-cortical-synapse-LTS-config-new-model.py
Figure6-cortical-synapse-LTS-config-new-model.py
 
 
Figure6-cortical-synapse-LTS-spiking-config-new-model.py
Figure6-cortical-synapse-LTS-spiking-config-new-model.py
 
 
Figure6-thalamic-synapse-config.py
Figure6-thalamic-synapse-config.py
 
 
Figure6-thalamic-synapse-spiking-config.py
Figure6-thalamic-synapse-spiking-config.py
 
 
Figure7-Simulate-Network-cortical-increase-config-new-model.py
Figure7-Simulate-Network-cortical-increase-config-new-model.py
 
 
Figure8-Simulate-Network-timing-config-new-model.py
Figure8-Simulate-Network-timing-config-new-model.py
 
 
FigureS5.py
FigureS5.py
 
 
Neuron_model_extended.py
Neuron_model_extended.py
 
 
README.md
README.md
 
 
config-Figure4-NO.json
config-Figure4-NO.json
 
 
config-Figure5-M4.json
config-Figure5-M4.json
 
 
config-Figure6-cortical-synapse-ChIN-spiking.json
config-Figure6-cortical-synapse-ChIN-spiking.json
 
 
config-Figure6-cortical-synapse-ChIN.json
config-Figure6-cortical-synapse-ChIN.json
 
 
config-Figure6-cortical-synapse-LTS-spiking.json
config-Figure6-cortical-synapse-LTS-spiking.json
 
 
config-Figure6-cortical-synapse-LTS.json
config-Figure6-cortical-synapse-LTS.json
 
 
config-Figure6-thalamic-synapse-ChIN-spiking.json
config-Figure6-thalamic-synapse-ChIN-spiking.json
 
 
config-Figure6-thalamic-synapse-ChIN.json
config-Figure6-thalamic-synapse-ChIN.json
 
 
config-Figure7-Simulate-Network-cortical-increase.json
config-Figure7-Simulate-Network-cortical-increase.json
 
 
config-Figure7-Simulate-Network-thalamic-burst.json
config-Figure7-Simulate-Network-thalamic-burst.json
 
 
config-Figure8-Simulate-Network-timing.json
config-Figure8-Simulate-Network-timing.json
 
 
config-S5.json
config-S5.json
 
 

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ChIN-LTS-Network-simulation

Simulations for ChIN-LTS network with extrinsic cortical and thalamic input - with nitric oxide and muscarinic modulation

Installing the environment

Using Miniconda

Install NEURON according to the instructions: NEURON

The simulationsare done via running the following command, for example for Figure 6 thalamic synapse simulation for ChINs:

python Figure6-thalamic-synapse.py

The results will be in Output-folder.

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Simulations for ChIN-LTS network with extrinsic cortical and thalamic input - with nitric oxide and muscarinic modulation

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