bulk-rnaseq.yaml.lock

tools:
- name: sortmerna
  owner: rnateam
  revisions:
  - 10b84b577117
  - eb35257d2e29
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: edger
  owner: iuc
  revisions:
  - 070900306913
  - 0cb907a2a810
  - 334ce9b1bac5
  - 3d89af8a44f0
  - 555659de7321
  - 5bf899c13979
  - 6e53e565fc6a
  - a8305cf0c951
  - ae2aad0a6d50
  - d79ed3ec25fe
  - df0c8d0a5992
  - f2843df56434
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: limma_voom
  owner: iuc
  revisions:
  - 0921444c832d
  - 119b069fc845
  - 32511f586472
  - 58c35179ebf0
  - 708348a17fa1
  - d6f5fa4ee473
  - e827f9aae031
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: qualimap2_bamqc
  owner: refinery-platform
  revisions:
  - a2438e0f1bbf
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: deseq2
  owner: iuc
  revisions:
  - 0696db066a5b
  - 6a3a025714d3
  - 71bacea10eee
  - 7ff33c2d525b
  - 8fe98f7094de
  - 9a882d108833
  - cd9874cb9019
  - d027d1f4984e
  - de44f8eff84a
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: kallisto_quant
  owner: iuc
  revisions:
  - 10c98fab6c5a
  - 2568a3b975cb
  - 40985510cd98
  - 4f9c4e6566e5
  - 60f888039fb2
  - c971db6f0fe5
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: salmon
  owner: bgruening
  revisions:
  - 15cd64d7c58b
  - 49121db48873
  - 6b0ba6de1424
  - 7fdb9d1591e2
  - b265be7af3db
  - c8903f357804
  - cc05793bb896
  - e3d32471da11
  - ebab418107f5
  - f4d5237a84f6
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: cutadapt
  owner: lparsons
  revisions:
  - 093678460093
  - 104d86c98776
  - 135b80fb1ac2
  - 288f97432497
  - 44e2cc14f75b
  - 48f587c13075
  - 4e5056fefd88
  - 5915ea1ec9b1
  - 5eb7e84243f2
  - 64172f1c1202
  - 660cffd8d92a
  - 8c0175e03cee
  - 944ae523bacb
  - 9845c649f41b
  - aa784cb3810d
  - b1c926deaa2d
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  - c4b82dce8335
  - c5e2e5902201
  - de6cebe3c043
  - e4691e1589d3
  - fe74900d6dc7
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: multiqc
  owner: iuc
  revisions:
  - 3d93dd18d9f8
  - 5e33b465d8d5
  - 75c93c70d094
  - 9a913cdee30e
  - abfd8a6544d7
  - b2f1f75d49c4
  - bf675f34b056
  - c19b16e5729c
  - f7985e0479b9
  - f7e2f1eb3a16
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: hisat2
  owner: iuc
  revisions:
  - 0c16cad5e03b
  - 26371a1df031
  - 3fb01a8c902d
  - 61ee47027bd3
  - 6c19daec423d
  - a86e80d3c09c
  - d4b55e2beb12
  - f4af63aaf57a
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: tophat2
  owner: devteam
  revisions:
  - 16c4255042be
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: sra_tools
  owner: iuc
  revisions:
  - 1ec814014652
  - 248f85ff0733
  - 4317d3cb6cba
  - 494b2ec08162
  - 4df8de2d0e48
  - 516a54ddf218
  - 5e6237d58b0c
  - 653e89d73fc4
  - 6591f049cf7e
  - 69ebb7f46e45
  - 6ea73833cf67
  - 7068f48d0ef9
  - 734abc7ac21d
  - 751a694ec620
  - 83c7d564b128
  - 8848455c0270
  - 964579f93c54
  - 9a776b080193
  - aad3885b3216
  - ba931a59dd59
  - c441583adae5
  - de0f7e0a3896
  - e08a7ad4378b
  - e407b9da183a
  - f5ea3ce9b9b0
  - f8054ea1c365
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: rgrnastar
  owner: iuc
  revisions:
  - 3e94726bfa9d
  - 3ea5a2a63fa2
  - 4014de1b6daf
  - 4074fc1940e2
  - 44959aa06aeb
  - 4df95e2d7f61
  - 5ec75f5dae3c
  - 79de45b5069b
  - 7ed2edc1337f
  - 850f3679b9b4
  - 91e0f03268ca
  - 980d2a2e1180
  - a2b0feda6933
  - b0f2be869d6d
  - b9e04854e2bb
  - c772497b2c32
  - c7c55b694974
  - d5659efd66aa
  - e132e7d02a3e
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: kallisto_pseudo
  owner: iuc
  revisions:
  - 01247aaf0a10
  - 1c75aa5de15e
  - 5ae5c312d718
  - 87c11c05d238
  - a157781cddd7
  - ce5d418183c5
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: rmarkdown_wgcna
  owner: mingchen0919
  revisions:
  - 05bcad4b5b4f
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: htseq_count
  owner: lparsons
  revisions:
  - 4418229c501e
  - 67b0b160903a
  - 7f5a8d427b39
  - 916cb26bd9d3
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastqc
  owner: devteam
  revisions:
  - 2c64fded1286
  - 3d0c7bdf12f5
  - 3e1cdf5406db
  - 5ec9f6bceaee
  - e7b2202befea
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: featurecounts
  owner: iuc
  revisions:
  - 1b851f87fbe0
  - 38b6d12edc68
  - 6f66ae7c5f7a
  - 7db9d3ea71c9
  - 90d16db017d7
  - a37612abf7f9
  - a56fbe2d6ba7
  - ce44c6f2ba38
  - ea04b737afa0
  - f3a5f075498f
  - f9d49f5cb597
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: gtf2gene_list
  owner: ebi-gxa
  revisions:
  - 00ee933b08fd
  - 040d4b3a19d5
  - 14b3f2a4523b
  - 1a642de6db01
  - 247b439a78f7
  - b6354c917ef9
  - b95e6a9bb15c
  - e255c0e5dfca
  tool_panel_section_label: Util
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: text_processing
  owner: bgruening
  revisions:
  - 0a8c6b61f0f4
  - 12615d397df7
  - 86755160afbf
  - 9ff72e942410
  - d698c222f354
  - ddf54b12c295
  - f46f0e4f75c4
  - fb4ff3c42cd3
  - fbf99087e067
  tool_panel_section_label: Util
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: rseqc
  owner: nilesh
  revisions:
  - 1421603cc95b
  - 1a052c827e88
  - 27e16a30667a
  - 473382134e56
  - 5968573462fa
  - dbedfc5f5a3c
  - f437057e46f1
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: package_qualimap_2_2
  owner: refinery-platform
  revisions:
  - bcc7b19f86fa
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_quality_filter
  owner: devteam
  revisions:
  - 64e9a6afdd0c
  - 7b4468117008
  - ce9cd02d5b88
  tool_panel_section_label: RNA-Seq
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastx_artifacts_filter
  owner: devteam
  revisions:
  - 529bccd5e4a1
  - d5e9e83cd3d8
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: bowtie2
  owner: devteam
  revisions:
  - 03e9b2fbc005
  - 0d4acadabb04
  - cd659e8cc5fa
  - d5ceb9f3c25b
  - f6877ad76b00
  tool_panel_section_label: Mapping
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: data_manager_refgenie_pull
  owner: blankenberglab
  revisions:
  - 2cb1863cd236
  - b2fa406276e7
  tool_panel_section_label: Manage Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_trimmer_by_quality
  owner: devteam
  revisions:
  - 8050e091e99b
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_filter_n
  owner: ebi-gxa
  revisions:
  - df87d29fac7f
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_trim_poly_at
  owner: ebi-gxa
  revisions:
  - ebca4912eabe
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: atlas_fastq_provider
  owner: ebi-gxa
  revisions:
  - 22ce1e7f1aaa
  tool_panel_section_label: Get Data
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: samtools_view
  owner: iuc
  revisions:
  - 0dbf49c414ae
  - 2dce91e11ca7
  - 32dc5f781059
  - 5826298f6a73
  - 6be888be75f9
  tool_panel_section_label: SAM/BAM
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_quality_trimmer
  owner: ebi-gxa
  revisions:
  - 27e997d5c273
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_pair
  owner: ebi-gxa
  revisions:
  - 6e13890afaef
  tool_panel_section_label: FASTA/FASTQ manipulation
  tool_shed_url: toolshed.g2.bx.psu.edu