jenkins-k8s-pod.yaml

apiVersion: v1
kind: Pod
metadata:
  namespace: jenkins-gene-expression
spec:
  nodeSelector:
    topology.kubernetes.io/zone: "europe-west2-a"
  serviceAccountName: admin-jenkins-gene-expression
  # If we set workspaceVolume dynamicPVC() or workspaceVolume persistentVolumeClaimWorkspaceVolume() we need to add a
  # fsGroup 1000 to make the /home/jenkins/agent directory writable. Otherwise, we get the following exception in the
  # jnlp container:
  # Exception in thread "main" java.io.IOException: The specified working directory should be fully accessible to the remoting executable (RWX): /home/jenkins/agent
  # The securityContext in the pod is inherited, as it becomes the default pod template
  securityContext:
    fsGroup: 1000
  containers:
    - name: "kubectl"
      image: bitnami/kubectl
      command: [ "/bin/sh" ]
      args: [ "-c", "kubectl scale --replicas=2 solrcloud scxa && sleep 2h" ]
      resources:
        requests:
          memory: "0.5Gi"
        limits:
          memory: "0.5Gi"
    - name: jnlp
      resources:
        requests:
          memory: "512Mi"
        limits:
          memory: "512Mi"
    - name: openjdk
      image: openjdk:11
      resources:
        requests:
          memory: "3.5Gi"
          ephemeral-storage: "5Gi"
        limits:
          memory: "4Gi"
      env:
      - name: GRADLE_OPTS
        value: "-Dorg.gradle.daemon=false"
      - name: GRADLE_RO_DEP_CACHE
        value: "/root/gradle-ro-dep-cache"
      command: [ "/bin/sh" ]
      args: [ "-c", "mkdir -p /root/expdesign-rw && cp /test-data/expdesign/* /root/expdesign-rw ; sleep 2h" ]
      volumeMounts:
        - mountPath: /test-data/scxa
          name: scxa-data
          readOnly: true
        - mountPath: /test-data/expdesign
          name: scxa-expdesign
          readOnly: true
        - mountPath: /test-data/bioentity_properties
          name: bioentity-properties
          readOnly: true
        - mountPath: /root/gradle-ro-dep-cache
          name: gradle-ro-dep-cache
          readOnly: true
    - name: postgres
      image: postgres:11-alpine
      resources:
        requests:
          memory: "100Mi"
        limits:
          memory: "200Mi"
      env:
        - name: POSTGRES_DB
          value: "postgres"
        - name: POSTGRES_USER
          value: "postgres"
        - name: POSTGRES_PASSWORD
          value: "postgres"
  volumes:
    - name: scxa-data
      persistentVolumeClaim:
        claimName: scxa-data-rox
        readOnly: true
    - name: scxa-expdesign
      persistentVolumeClaim:
        claimName: scxa-expdesign-rox
        readOnly: true
    - name: bioentity-properties
      persistentVolumeClaim:
        claimName: bioentity-properties-rox
        readOnly: true
    - name: gradle-ro-dep-cache
      persistentVolumeClaim:
        claimName: gradle-7.0-ro-dep-cache-rox
        readOnly: true