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1. phantasm phantasm Public

   PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

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2. primerForge primerForge Public

   software to identify primers that can distinguish genomes

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3. xenoGI xenoGI Public

   Forked from ecbush/xenoGI

   Code for detecting genomic island insertions in clades of microbes. This fork is used specifically for PHANTASM

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4. pseudofinder pseudofinder Public

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5. bioconda-recipes bioconda-recipes Public

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6. lyve-SET lyve-SET Public

   Forked from lskatz/lyve-SET

   💃 🌴 LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations

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