ctmrbio / Salgae_c-di-GMP_analysis Public

Minhash/pangenome analysis notebooks and associated files

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Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
.ipynb_checkpoints		.ipynb_checkpoints
Salgae_roary_gffs		Salgae_roary_gffs
kegg_maps		kegg_maps
pg_rep_emapper_1e-3		pg_rep_emapper_1e-3
pg_rep_emapper_1e-6		pg_rep_emapper_1e-6
r_plots		r_plots
roary_KIonly_id90		roary_KIonly_id90
sourmash/assemblies		sourmash/assemblies
.gitignore		.gitignore
PRJNA526057_AssemblyDetails.txt		PRJNA526057_AssemblyDetails.txt
README.md		README.md
Sourmash_analysis.ipynb		Sourmash_analysis.ipynb
assembly_strain_map.tsv		assembly_strain_map.tsv
c-di-GMP_pangenome_analysis.ipynb		c-di-GMP_pangenome_analysis.ipynb
pg_ref_map.csv		pg_ref_map.csv
pg_representatives.faa		pg_representatives.faa
salgae_asm_acc_list.txt		salgae_asm_acc_list.txt
strain_metadata.csv		strain_metadata.csv
strain_metadata_smash.csv		strain_metadata_smash.csv