Workflows for amplicon data processing, often based on 3rd party software. All custom scripts mentioned in the tutorials are also included in this folder.
Amplicons_overlap uses unoise to process amplicon libraries where the forward and reverse sequencing reads overlap.
Amplicons_no-overlap does the same for the case where the reads don't (or rarely) overlap. This one is more convoluted, so do try to get overlaps. this text is not up-to-date
Quick_picrust helps you prepare your data for picrust analysis if you absolutely refuse to use Qiime or Mothur.
Convert_to_phylogeny is a guide to calculating Unifrac like statistics from your OTU table.