Better action. But perhaps there is a bug about coronal sections?

Browsing Functions/AtlasTransformBrowser.m

@@ -190,6 +190,11 @@ function hotkeyFcn(f, slice_figure, keydata, allData, save_location, save_suffix
 
             disp(['probe point mode -- selecting probe ' num2str(ud.currentProbe) ' (' ud.ProbeColor{ud.currentProbe} ')']); 
             ud.getPoint_for_transform = false; 
+            try
+                set(ud.pointHands_for_transform(:), 'Visible', 'off');
+                ud.pointsText.Visible = 'off';
+            catch
+            end
 
             % show Transformed Slice & Probage Viewer, if not already showing
             if ~ud.slice_at_shift_start; add = 1; else; add = 0; end

Browsing Functions/sliceBrowser.m

@@ -61,7 +61,8 @@ function sliceClickCallback(im, keydata)
     clickY = round(keydata.IntersectionPoint(2));
 
     ud.pointList(end+1, :) = [clickX, ud.ref_size(1) - clickY];
-    ud.pointHands(end+1) = plot(ud.sliceAx, clickX, clickY, 'ro', 'color', [0 .5 0],'linewidth',2,'markers',4);    
+    set(ud.pointHands,'Color',[.7 .3 .3])
+    ud.pointHands(end+1) = plot(ud.sliceAx, clickX, clickY, 'o', 'color', [0 .9 0],'linewidth',2,'markers',4);
 
      if clickX < 100 && (ud.ref_size(1) - clickY) < 100 % if click in corner, break
         ud.pointList = []; 
@@ -134,6 +135,7 @@ function SliceAtlasHotkeyFcn(fig, keydata, f)
 
 
 function ud = updateSliceImage(ud)
+    %TODO occasionally pointList has more items than pointHands
 
     title_ending = '';
 
@@ -169,6 +171,8 @@ function SliceAtlasHotkeyFcn(fig, keydata, f)
             for i = 1:size(ud.pointList,1)
                 ud.pointHands(end+1) = plot(ud.sliceAx, ud.pointList(i,1), ud.ref_size(1) - ud.pointList(i,2), 'ro', 'color', [0 .5 0],'linewidth',2,'markers',4);
             end
+            set(ud.pointHands(end),'color', [0 .9 0]);
+
             title_ending = ' (transform points loaded)';
         end       
     end