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  1. Suite2p-Output-Processor Suite2p-Output-Processor Public

    Process the stabilized outputs of Suite2p for manual ROI selection

    ImageJ Macro 1

  2. Depth-Finder Depth-Finder Public

    Goofy excel spreadsheet for finding depth during 2p imaging experiments which needs to be modernized.

    ImageJ Macro

  3. ROI-GUI-Labeler ROI-GUI-Labeler Public

    ImageJ Macro for helping the manual labeling of ROIs

    ImageJ Macro

  4. ThorStackSplitter ThorStackSplitter Public

    This is an ImageJ macro which takes in the OME Tiffs output from ThorImageLS and does a variety of things to get them ready for image stabilization and processing.

    ImageJ Macro 2

  5. ThorSync-Processor ThorSync-Processor Public

    Opens and converts ThorSync to csv

    Python

  6. AbbyCui/CalciumImagingAnalysis AbbyCui/CalciumImagingAnalysis Public

    Python 1 2