Remove data loading code (#420)

* Remove data loading code * update pinned version of brainglobe-utils
brainglobe · May 15, 2024 · 9b23f5c · 9b23f5c
1 parent 8b4deef
commit 9b23f5c
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Showing 5 changed files with 3 additions and 103 deletions.
diff --git a/cellfinder/core/tools/IO.py b/cellfinder/core/tools/IO.py
diff --git a/pyproject.toml b/pyproject.toml
@@ -20,7 +20,7 @@ classifiers = [
 ]
 requires-python = ">=3.9"
 dependencies = [
-    "brainglobe-utils>=0.4.3",
+    "brainglobe-utils>=0.5.0",
     "brainglobe-napari-io>=0.3.4",
     "dask[array]",
     "fancylog>=0.0.7",

diff --git a/tests/core/test_integration/test_detection.py b/tests/core/test_integration/test_detection.py
@@ -5,9 +5,9 @@
 import numpy as np
 import pytest
 from brainglobe_utils.general.system import get_num_processes
+from brainglobe_utils.IO.image.load import read_with_dask
 
 from cellfinder.core.main import main
-from cellfinder.core.tools.IO import read_with_dask
 
 data_dir = os.path.join(
     os.getcwd(), "tests", "data", "integration", "detection"

diff --git a/tests/core/test_integration/test_detection_structure_splitting.py b/tests/core/test_integration/test_detection_structure_splitting.py
@@ -9,9 +9,9 @@
 import os
 
 import pytest
+from brainglobe_utils.IO.image.load import read_with_dask
 
 from cellfinder.core.main import main
-from cellfinder.core.tools.IO import read_with_dask
 
 data_dir = os.path.join(
     os.getcwd(), "tests", "data", "integration", "detection"

diff --git a/tests/core/test_unit/test_tools/test_IO.py b/tests/core/test_unit/test_tools/test_IO.py