Notify slack on scheduled test failure (#221) #508
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name: tests | |
on: | |
push: | |
branches: | |
- main | |
tags: | |
- '*' | |
pull_request: | |
schedule: | |
# Runs at 6:10am UTC on Monday | |
- cron: '10 6 * * 1' | |
jobs: | |
linting: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: neuroinformatics-unit/actions/lint@v2 | |
manifest: | |
name: Check manifest | |
runs-on: ubuntu-latest | |
steps: | |
- uses: neuroinformatics-unit/actions/check_manifest@v2 | |
test: | |
needs: [linting, manifest] | |
name: ${{ matrix.os }} py${{ matrix.python-version }} | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
# Run across a mixture of Python versions and operating systems | |
include: | |
- os: ubuntu-latest | |
python-version: "3.12" | |
- os: macos-13 # just intel mac here, silicon mac tested with mamba due to niftyreg complications | |
python-version: "3.11" | |
- os: windows-latest | |
python-version: "3.10" | |
steps: | |
- name: Cache brainglobe directory | |
uses: actions/cache@v3 | |
with: | |
path: | # ensure we don't cache any interrupted atlas download and extraction, if e.g. we cancel the workflow manually | |
~/.brainglobe | |
!~/.brainglobe/atlas.tar.gz | |
key: atlases | |
- name: Setup QT libraries | |
uses: tlambert03/setup-qt-libs@v1 | |
# Helps set up VTK with a headless display | |
- uses: pyvista/setup-headless-display-action@v2 | |
- name: Run tests | |
uses: neuroinformatics-unit/actions/test@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
secret-codecov-token: ${{ secrets.CODECOV_TOKEN }} | |
use-xvfb: true | |
- name: Notify slack on scheduled failure | |
if: failure() && github.event_name == 'schedule' | |
uses: ravsamhq/notify-slack-action@v2 | |
with: | |
status: ${{ job.status }} # required | |
notify_when: 'failure' | |
env: | |
SLACK_WEBHOOK_URL: ${{ secrets.SLACK_NOTIFYBOT_WEBHOOK_URL }} # required | |
test-with-conda: | |
# mainly checks conda installation of niftyreg, especially key on Silicon macs | |
needs: [linting, manifest] | |
name: Test conda-install, on ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, macos-latest, windows-latest] | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v3 | |
- name: Setup mamba environment | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
init-shell: bash | |
environment-name: niftyreg-env | |
create-args: >- | |
python=3.12 | |
setuptools | |
setuptools_scm | |
wheel | |
- name: Install package into environment | |
shell: bash -el {0} | |
run: | | |
pip install .[dev] | |
- name: Run backend tests (no conda binaries) | |
shell: bash -el {0} | |
run: | | |
pytest -v tests/tests/test_backend | |
- name: Install niftyreg with conda | |
shell: bash -el {0} | |
run: | | |
micromamba install niftyreg | |
- name: Run backend tests(conda binaries present) | |
shell: bash -el {0} | |
run: | | |
pytest -v tests/tests/test_backend | |
build_sdist_wheel: | |
name: Build source distribution and wheel | |
needs: [test, test-with-conda] | |
if: github.event_name == 'push' && github.ref_type == 'tag' | |
runs-on: ubuntu-latest | |
steps: | |
- uses: neuroinformatics-unit/actions/build_sdist_wheels@v2 | |
deploy: | |
name: Deploy to PyPI | |
needs: [build_sdist_wheel] | |
if: github.event_name == 'push' && github.ref_type == 'tag' | |
runs-on: ubuntu-latest | |
steps: | |
- uses: neuroinformatics-unit/actions/upload_pypi@v2 | |
with: | |
secret-pypi-key: ${{ secrets.TWINE_API_KEY }} |